Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis
Members of the phylum <i>Actinomycetota</i> (formerly <i>Actinobacteria</i>) have historically been the most prolific providers of small bioactive molecules. Although the genus <i>Streptomyces</i> is the best-known member for this issue, other genera, such as <...
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
MDPI AG
2022-11-01
|
| Series: | BioTech |
| Subjects: | |
| Online Access: | https://www.mdpi.com/2673-6284/11/4/53 |
| _version_ | 1797461181011591168 |
|---|---|
| author | Jeysson Sánchez-Suárez Luis Díaz Ericsson Coy-Barrera Luisa Villamil |
| author_facet | Jeysson Sánchez-Suárez Luis Díaz Ericsson Coy-Barrera Luisa Villamil |
| author_sort | Jeysson Sánchez-Suárez |
| collection | DOAJ |
| description | Members of the phylum <i>Actinomycetota</i> (formerly <i>Actinobacteria</i>) have historically been the most prolific providers of small bioactive molecules. Although the genus <i>Streptomyces</i> is the best-known member for this issue, other genera, such as <i>Gordonia</i>, have shown interesting potential in their specialized metabolism. Thus, we combined herein the result of a comprehensive literature survey on metabolites derived from <i>Gordonia</i> strains with a comparative genomic analysis to examine the potential of the specialized metabolism of the genus <i>Gordonia</i>. Thirty <i>Gordonia</i>-derived compounds of different classes were gathered (i.e., alkaloids, amides, phenylpropanoids, and terpenoids), exhibiting antimicrobial and cytotoxic activities, and several were also isolated from <i>Streptomyces</i> (e.g., actinomycin, nocardamin, diolmycin A1). With the genome data, we estimated an open pan-genome of 57,901 genes, most of them being part of the cloud genome. Regarding the BGCs content, 531 clusters were found, including Terpenes, RiPP-like, and NRPS clusters as the most frequent clusters. Our findings demonstrated that <i>Gordonia</i> is a poorly studied genus in terms of its specialized metabolism production and potential applications. Nevertheless, given their BGCs content, <i>Gordonia</i> spp. are a valuable biological resource that could expand the chemical spectrum of the phylum <i>Actinomycetota</i>, involving novel BGCs for inspiring innovative outlines for synthetic biology and further use in biotechnological initiatives. Therefore, further studies and more efforts should be made to explore different environments and evaluate other bioactivities. |
| first_indexed | 2024-03-09T17:16:43Z |
| format | Article |
| id | doaj.art-e4e5a052130e4856b46b18ac9c62b919 |
| institution | Directory Open Access Journal |
| issn | 2673-6284 |
| language | English |
| last_indexed | 2024-03-09T17:16:43Z |
| publishDate | 2022-11-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | BioTech |
| spelling | doaj.art-e4e5a052130e4856b46b18ac9c62b9192023-11-24T13:38:12ZengMDPI AGBioTech2673-62842022-11-011145310.3390/biotech11040053Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based AnalysisJeysson Sánchez-Suárez0Luis Díaz1Ericsson Coy-Barrera2Luisa Villamil3Doctoral Program in Biosciences, School of Engineering, Universidad de La Sabana, Chía 250001, ColombiaDoctoral Program in Biosciences, School of Engineering, Universidad de La Sabana, Chía 250001, ColombiaBioorganic Chemistry Laboratory, Universidad Militar Nueva Granada, Cajicá 250247, ColombiaDoctoral Program in Biosciences, School of Engineering, Universidad de La Sabana, Chía 250001, ColombiaMembers of the phylum <i>Actinomycetota</i> (formerly <i>Actinobacteria</i>) have historically been the most prolific providers of small bioactive molecules. Although the genus <i>Streptomyces</i> is the best-known member for this issue, other genera, such as <i>Gordonia</i>, have shown interesting potential in their specialized metabolism. Thus, we combined herein the result of a comprehensive literature survey on metabolites derived from <i>Gordonia</i> strains with a comparative genomic analysis to examine the potential of the specialized metabolism of the genus <i>Gordonia</i>. Thirty <i>Gordonia</i>-derived compounds of different classes were gathered (i.e., alkaloids, amides, phenylpropanoids, and terpenoids), exhibiting antimicrobial and cytotoxic activities, and several were also isolated from <i>Streptomyces</i> (e.g., actinomycin, nocardamin, diolmycin A1). With the genome data, we estimated an open pan-genome of 57,901 genes, most of them being part of the cloud genome. Regarding the BGCs content, 531 clusters were found, including Terpenes, RiPP-like, and NRPS clusters as the most frequent clusters. Our findings demonstrated that <i>Gordonia</i> is a poorly studied genus in terms of its specialized metabolism production and potential applications. Nevertheless, given their BGCs content, <i>Gordonia</i> spp. are a valuable biological resource that could expand the chemical spectrum of the phylum <i>Actinomycetota</i>, involving novel BGCs for inspiring innovative outlines for synthetic biology and further use in biotechnological initiatives. Therefore, further studies and more efforts should be made to explore different environments and evaluate other bioactivities.https://www.mdpi.com/2673-6284/11/4/53<i>Actinobacteria</i><i>Mycobacteriales</i>secondary metabolitesnaturally occurring compoundsbiosynthetic gene clusters |
| spellingShingle | Jeysson Sánchez-Suárez Luis Díaz Ericsson Coy-Barrera Luisa Villamil Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis BioTech <i>Actinobacteria</i> <i>Mycobacteriales</i> secondary metabolites naturally occurring compounds biosynthetic gene clusters |
| title | Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis |
| title_full | Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis |
| title_fullStr | Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis |
| title_full_unstemmed | Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis |
| title_short | Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis |
| title_sort | specialized metabolism of gordonia genus an integrated survey on chemodiversity combined with a comparative genomics based analysis |
| topic | <i>Actinobacteria</i> <i>Mycobacteriales</i> secondary metabolites naturally occurring compounds biosynthetic gene clusters |
| url | https://www.mdpi.com/2673-6284/11/4/53 |
| work_keys_str_mv | AT jeyssonsanchezsuarez specializedmetabolismofgordoniagenusanintegratedsurveyonchemodiversitycombinedwithacomparativegenomicsbasedanalysis AT luisdiaz specializedmetabolismofgordoniagenusanintegratedsurveyonchemodiversitycombinedwithacomparativegenomicsbasedanalysis AT ericssoncoybarrera specializedmetabolismofgordoniagenusanintegratedsurveyonchemodiversitycombinedwithacomparativegenomicsbasedanalysis AT luisavillamil specializedmetabolismofgordoniagenusanintegratedsurveyonchemodiversitycombinedwithacomparativegenomicsbasedanalysis |