The complete chloroplast genome sequence of Ficus hirta (Moraceae)
The dry root (Radix Fici Hirtae) of Ficus hirta has been used as a traditional herbal medicine in Ling nan regions of China for a long time. As its large market demand, the wild resources of F. hirta have sharply reduced. It is necessary to conduct the study of conservation genetics. However, there...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1689867 |
| _version_ | 1797639605741158400 |
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| author | Yinrong Liu Wenna Chen Fang Li Chan Li Xuena Xie Zhi Chao Enwei Tian |
| author_facet | Yinrong Liu Wenna Chen Fang Li Chan Li Xuena Xie Zhi Chao Enwei Tian |
| author_sort | Yinrong Liu |
| collection | DOAJ |
| description | The dry root (Radix Fici Hirtae) of Ficus hirta has been used as a traditional herbal medicine in Ling nan regions of China for a long time. As its large market demand, the wild resources of F. hirta have sharply reduced. It is necessary to conduct the study of conservation genetics. However, there is still lack of complete genome information for the research on evolutionary biology, population genetics and phylogeography of this species. Here, we sequenced the complete chloroplast (CP) genome of F. hirta using Next Generation Sequencing technology (NGS). The CP genome of F. hirta is 160,374 bp in length, which contains a large single-copy (LSC) region of 88,446 bp, a small sing-copy (SSC) region of 18,134 bp, and two inverted repeat (IRa and IRb) regions of 26,897 bp. A total of 130 genes were successfully annotated containing 85 protein-coding genes, 37 tRNA genes and 8 rRNA genes. Phylogenetic analysis support genus Ficus is monophyletic and F. hirta is closely related to F. carica within this genus. |
| first_indexed | 2024-03-11T13:19:03Z |
| format | Article |
| id | doaj.art-e5823a79b0b544d291372ef9e99ab95e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:03Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e5823a79b0b544d291372ef9e99ab95e2023-11-03T10:38:52ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01424041404210.1080/23802359.2019.16898671689867The complete chloroplast genome sequence of Ficus hirta (Moraceae)Yinrong Liu0Wenna Chen1Fang Li2Chan Li3Xuena Xie4Zhi Chao5Enwei Tian6Southern Medical UniversityHebei University of EngineeringSouthern Medical UniversitySouthern Medical UniversitySouthern Medical UniversitySouthern Medical UniversitySouthern Medical UniversityThe dry root (Radix Fici Hirtae) of Ficus hirta has been used as a traditional herbal medicine in Ling nan regions of China for a long time. As its large market demand, the wild resources of F. hirta have sharply reduced. It is necessary to conduct the study of conservation genetics. However, there is still lack of complete genome information for the research on evolutionary biology, population genetics and phylogeography of this species. Here, we sequenced the complete chloroplast (CP) genome of F. hirta using Next Generation Sequencing technology (NGS). The CP genome of F. hirta is 160,374 bp in length, which contains a large single-copy (LSC) region of 88,446 bp, a small sing-copy (SSC) region of 18,134 bp, and two inverted repeat (IRa and IRb) regions of 26,897 bp. A total of 130 genes were successfully annotated containing 85 protein-coding genes, 37 tRNA genes and 8 rRNA genes. Phylogenetic analysis support genus Ficus is monophyletic and F. hirta is closely related to F. carica within this genus.http://dx.doi.org/10.1080/23802359.2019.1689867ficus hirtacomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Yinrong Liu Wenna Chen Fang Li Chan Li Xuena Xie Zhi Chao Enwei Tian The complete chloroplast genome sequence of Ficus hirta (Moraceae) Mitochondrial DNA. Part B. Resources ficus hirta complete chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome sequence of Ficus hirta (Moraceae) |
| title_full | The complete chloroplast genome sequence of Ficus hirta (Moraceae) |
| title_fullStr | The complete chloroplast genome sequence of Ficus hirta (Moraceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Ficus hirta (Moraceae) |
| title_short | The complete chloroplast genome sequence of Ficus hirta (Moraceae) |
| title_sort | complete chloroplast genome sequence of ficus hirta moraceae |
| topic | ficus hirta complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1689867 |
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