The influence of bioclimate on soil microbial communities of cork oak
Abstract Background Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forest...
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| Format: | Article |
| Language: | English |
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BMC
2022-06-01
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| Series: | BMC Microbiology |
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| Online Access: | https://doi.org/10.1186/s12866-022-02574-2 |
| _version_ | 1811227119681798144 |
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| author | Daniela Costa Rui M. Tavares Paula Baptista Teresa Lino-Neto |
| author_facet | Daniela Costa Rui M. Tavares Paula Baptista Teresa Lino-Neto |
| author_sort | Daniela Costa |
| collection | DOAJ |
| description | Abstract Background Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forests under different edaphoclimatic conditions were described by using a metabarcoding strategy targeting ITS2 and 16S barcodes. Results A total of 11,974 fungal and 12,010 bacterial amplicon sequence variants (ASVs) were obtained, revealing rich and diverse microbial communities associated with different cork oak forests. Bioclimate was described as the major factor influencing variability in these communities (or bioclimates/cork oak forest for fungal community), followed by boron and granulometry. Also, pH explained variation of fungal communities, while C:N ratio contributed to bacterial variation. Fungal and bacterial biomarker genera for specific bioclimates were described. Their co-occurrence network revealed the existence of a complex and delicate balance among microbial communities. Conclusions The findings revealed that bacterial communities are more likely to be affected by different edaphoclimatic conditions than fungal communities, also predicting a higher impact of climate change on bacterial communities. The integration of cork oak fungal and bacterial microbiota under different bioclimates could be further explored to provide information about useful interactions for increasing cork oak forest sustainability in a world subject to climate changes. |
| first_indexed | 2024-04-12T09:36:07Z |
| format | Article |
| id | doaj.art-e60685e22d434b9eb160c69c40311f77 |
| institution | Directory Open Access Journal |
| issn | 1471-2180 |
| language | English |
| last_indexed | 2024-04-12T09:36:07Z |
| publishDate | 2022-06-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Microbiology |
| spelling | doaj.art-e60685e22d434b9eb160c69c40311f772022-12-22T03:38:14ZengBMCBMC Microbiology1471-21802022-06-0122111710.1186/s12866-022-02574-2The influence of bioclimate on soil microbial communities of cork oakDaniela Costa0Rui M. Tavares1Paula Baptista2Teresa Lino-Neto3Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of MinhoCentre of Molecular and Environmental Biology (CBMA), Department of Biology, University of MinhoCentro de Investigação de Montanha (CIMO), Instituto Politécnico de BragançaCentre of Molecular and Environmental Biology (CBMA), Department of Biology, University of MinhoAbstract Background Soil microbiomes are important to maintain soil processes in forests and confer protection to plants against abiotic and biotic stresses. These microbiomes can be affected by environmental changes. In this work, soil microbial communities from different cork oak Portuguese forests under different edaphoclimatic conditions were described by using a metabarcoding strategy targeting ITS2 and 16S barcodes. Results A total of 11,974 fungal and 12,010 bacterial amplicon sequence variants (ASVs) were obtained, revealing rich and diverse microbial communities associated with different cork oak forests. Bioclimate was described as the major factor influencing variability in these communities (or bioclimates/cork oak forest for fungal community), followed by boron and granulometry. Also, pH explained variation of fungal communities, while C:N ratio contributed to bacterial variation. Fungal and bacterial biomarker genera for specific bioclimates were described. Their co-occurrence network revealed the existence of a complex and delicate balance among microbial communities. Conclusions The findings revealed that bacterial communities are more likely to be affected by different edaphoclimatic conditions than fungal communities, also predicting a higher impact of climate change on bacterial communities. The integration of cork oak fungal and bacterial microbiota under different bioclimates could be further explored to provide information about useful interactions for increasing cork oak forest sustainability in a world subject to climate changes.https://doi.org/10.1186/s12866-022-02574-2Soil microbiomeITS16SCork oakBioclimate |
| spellingShingle | Daniela Costa Rui M. Tavares Paula Baptista Teresa Lino-Neto The influence of bioclimate on soil microbial communities of cork oak BMC Microbiology Soil microbiome ITS 16S Cork oak Bioclimate |
| title | The influence of bioclimate on soil microbial communities of cork oak |
| title_full | The influence of bioclimate on soil microbial communities of cork oak |
| title_fullStr | The influence of bioclimate on soil microbial communities of cork oak |
| title_full_unstemmed | The influence of bioclimate on soil microbial communities of cork oak |
| title_short | The influence of bioclimate on soil microbial communities of cork oak |
| title_sort | influence of bioclimate on soil microbial communities of cork oak |
| topic | Soil microbiome ITS 16S Cork oak Bioclimate |
| url | https://doi.org/10.1186/s12866-022-02574-2 |
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