Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655
Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting furt...
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| Format: | Article |
| Language: | English |
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Elsevier
2021-12-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340921008611 |
| _version_ | 1818873831139311616 |
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| author | Nicola Holden |
| author_facet | Nicola Holden |
| author_sort | Nicola Holden |
| collection | DOAJ |
| description | Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain. |
| first_indexed | 2024-12-19T13:00:57Z |
| format | Article |
| id | doaj.art-e627160477304a4db0275e36918dd10c |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-19T13:00:57Z |
| publishDate | 2021-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-e627160477304a4db0275e36918dd10c2022-12-21T20:20:14ZengElsevierData in Brief2352-34092021-12-0139107586Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655Nicola Holden0SRUC, Department of Rural Land Use, Craibstone Estate, Aberdeen AB21 9YA, UK; Cell and Molecular Sciences, James Hutton Institute, Dundee DD2 5DA, UK; Correspondence to: SRUC, Department of Rural Land Use, Craibstone Estate, Aberdeen AB21 9YA, UK.Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.http://www.sciencedirect.com/science/article/pii/S2352340921008611PhylogenomicsClonalityWhole genome alignmentWhole genome sequencing |
| spellingShingle | Nicola Holden Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 Data in Brief Phylogenomics Clonality Whole genome alignment Whole genome sequencing |
| title | Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 |
| title_full | Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 |
| title_fullStr | Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 |
| title_full_unstemmed | Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 |
| title_short | Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655 |
| title_sort | genomic data of an environmental escherichia coli isolate shows high resemblance to e coli k 12 reference strain mg1655 |
| topic | Phylogenomics Clonality Whole genome alignment Whole genome sequencing |
| url | http://www.sciencedirect.com/science/article/pii/S2352340921008611 |
| work_keys_str_mv | AT nicolaholden genomicdataofanenvironmentalescherichiacoliisolateshowshighresemblancetoecolik12referencestrainmg1655 |