Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm
Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify ge...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2016-12-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340916306266 |
| _version_ | 1811287595881070592 |
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| author | Vrutant V. Shah Benjamin Soibam Ruth A. Ritter Ashley Benham Jamina Oomen Amy K. Sater |
| author_facet | Vrutant V. Shah Benjamin Soibam Ruth A. Ritter Ashley Benham Jamina Oomen Amy K. Sater |
| author_sort | Vrutant V. Shah |
| collection | DOAJ |
| description | Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1]. |
| first_indexed | 2024-04-13T03:21:21Z |
| format | Article |
| id | doaj.art-e6d80502f0cd4593bd2ab66988986d6e |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-13T03:21:21Z |
| publishDate | 2016-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-e6d80502f0cd4593bd2ab66988986d6e2022-12-22T03:04:46ZengElsevierData in Brief2352-34092016-12-019C69970310.1016/j.dib.2016.09.054Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectodermVrutant V. Shah0Benjamin Soibam1Ruth A. Ritter2Ashley Benham3Jamina Oomen4Amy K. Sater5University of Houston, Houston, TX, USATexas Heart Institute, Houston, TX, USAUniversity of Houston, Houston, TX, USATexas Heart Institute, Houston, TX, USAStonybrook Univ., Stonybrook, NY, USAUniversity of Houston, Houston, TX, USASmall RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].http://www.sciencedirect.com/science/article/pii/S2352340916306266microRNANeuralEctodermXenopus |
| spellingShingle | Vrutant V. Shah Benjamin Soibam Ruth A. Ritter Ashley Benham Jamina Oomen Amy K. Sater Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm Data in Brief microRNA Neural Ectoderm Xenopus |
| title | Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm |
| title_full | Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm |
| title_fullStr | Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm |
| title_full_unstemmed | Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm |
| title_short | Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm |
| title_sort | data on micrornas and microrna targeted mrnas in xenopus ectoderm |
| topic | microRNA Neural Ectoderm Xenopus |
| url | http://www.sciencedirect.com/science/article/pii/S2352340916306266 |
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