The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae)
Echeveria lilacina Kimnach & Moran is a succulent plant having ornamental and ecological importance. In this study, the first complete chloroplast genome of Echeveria lilacina, a species belonging to the Crassulaceae family, was characterized from the de novo assembly of Illumina NovaSeq 6000 pa...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-05-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2077668 |
| _version_ | 1797638672093282304 |
|---|---|
| author | Gyoungju Nah Ji Ran Jeong Jae Hwan Lee Soon Yil Soh Sang Yong Nam |
| author_facet | Gyoungju Nah Ji Ran Jeong Jae Hwan Lee Soon Yil Soh Sang Yong Nam |
| author_sort | Gyoungju Nah |
| collection | DOAJ |
| description | Echeveria lilacina Kimnach & Moran is a succulent plant having ornamental and ecological importance. In this study, the first complete chloroplast genome of Echeveria lilacina, a species belonging to the Crassulaceae family, was characterized from the de novo assembly of Illumina NovaSeq 6000 paired-end sequencing data. The chloroplast genome of E. lilacina is 150,080 bp in length, which includes a large single-copy (LSC) region of 81,741 bp, a small single-copy (SSC) region of 16,747 bp, and a pair of identical inverted repeat regions (IRs) of 25,796 bp each. The genome annotation revealed a total of 138 genes, including 87 protein-coding genes, 41 transfer RNA (tRNA) genes, and 10 ribosomal RNA (rRNA) genes. The phylogenetic analysis with 15 complete chloroplast genome sequences including outgroup showed that E. lilacina formed the closest taxonomical relationship with Graptopetalum amethystinum in the Crassulaceae family. |
| first_indexed | 2024-03-11T13:06:01Z |
| format | Article |
| id | doaj.art-e7164a67129145219d8baffe2c924121 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:01Z |
| publishDate | 2022-05-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e7164a67129145219d8baffe2c9241212023-11-03T14:36:03ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-05-017588989110.1080/23802359.2022.20776682077668The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae)Gyoungju Nah0Ji Ran Jeong1Jae Hwan Lee2Soon Yil Soh3Sang Yong Nam4Genome Analysis Center at National Instrumentation Center for Environmental Management, Seoul National UniversityGenome Analysis Center at National Instrumentation Center for Environmental Management, Seoul National UniversityDepartment of Environmental Horticulture, Sahmyook UniversityNatural Science Research Institute, Sahmyook UniversityDepartment of Environmental Horticulture, Sahmyook UniversityEcheveria lilacina Kimnach & Moran is a succulent plant having ornamental and ecological importance. In this study, the first complete chloroplast genome of Echeveria lilacina, a species belonging to the Crassulaceae family, was characterized from the de novo assembly of Illumina NovaSeq 6000 paired-end sequencing data. The chloroplast genome of E. lilacina is 150,080 bp in length, which includes a large single-copy (LSC) region of 81,741 bp, a small single-copy (SSC) region of 16,747 bp, and a pair of identical inverted repeat regions (IRs) of 25,796 bp each. The genome annotation revealed a total of 138 genes, including 87 protein-coding genes, 41 transfer RNA (tRNA) genes, and 10 ribosomal RNA (rRNA) genes. The phylogenetic analysis with 15 complete chloroplast genome sequences including outgroup showed that E. lilacina formed the closest taxonomical relationship with Graptopetalum amethystinum in the Crassulaceae family.http://dx.doi.org/10.1080/23802359.2022.2077668echeveria lilacinacrassulaceaecomplete chloroplast genomenext generation sequencingphylogenetic analysis |
| spellingShingle | Gyoungju Nah Ji Ran Jeong Jae Hwan Lee Soon Yil Soh Sang Yong Nam The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) Mitochondrial DNA. Part B. Resources echeveria lilacina crassulaceae complete chloroplast genome next generation sequencing phylogenetic analysis |
| title | The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) |
| title_full | The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) |
| title_fullStr | The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) |
| title_full_unstemmed | The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) |
| title_short | The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) |
| title_sort | complete chloroplast genome of echeveria lilacina kimnach moran 1980 saxifragales crassulaceae |
| topic | echeveria lilacina crassulaceae complete chloroplast genome next generation sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2022.2077668 |
| work_keys_str_mv | AT gyoungjunah thecompletechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT jiranjeong thecompletechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT jaehwanlee thecompletechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT soonyilsoh thecompletechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT sangyongnam thecompletechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT gyoungjunah completechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT jiranjeong completechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT jaehwanlee completechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT soonyilsoh completechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae AT sangyongnam completechloroplastgenomeofecheverialilacinakimnachmoran1980saxifragalescrassulaceae |