CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

Having DNA-binding profiles for a sufficient number of genome-encoded transcription factors (TFs) opens up the perspectives for systematic evaluation of the upstream regulators for the gene lists. Plant Cistrome database, a large collection of TF binding profiles detected using the DAP-seq method, m...

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Bibliographic Details
Main Authors: Viktoriya V. Lavrekha, Victor G. Levitsky, Anton V. Tsukanov, Anton G. Bogomolov, Dmitry A. Grigorovich, Nadya Omelyanchuk, Elena V. Ubogoeva, Elena V. Zemlyanskaya, Victoria Mironova
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-08-01
Series:Frontiers in Plant Science
Subjects:
multi-omics data integration
DAP-seq
proximal promoters
RNA-seq
transcription factor binding profiles
Online Access:https://www.frontiersin.org/articles/10.3389/fpls.2022.942710/full

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