Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species
Elaeagnus glabra is an evergreen vine or climbing shrub with 5 m height. It is widespread in southern China. It grows in the sunny forests or forest margins below 1000 m a.s.l. In this paper, we report and describe the complete plastome of E. glabra in order to provide useful genomic data for its sy...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2020-01-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1702483 |
| _version_ | 1797639532449890304 |
|---|---|
| author | Kun-Kun Zhao Jian-Hua Wang Zhi-Xin Zhu Guo-Zheng Shi Shui-Xing Luo Hua-Feng Wang |
| author_facet | Kun-Kun Zhao Jian-Hua Wang Zhi-Xin Zhu Guo-Zheng Shi Shui-Xing Luo Hua-Feng Wang |
| author_sort | Kun-Kun Zhao |
| collection | DOAJ |
| description | Elaeagnus glabra is an evergreen vine or climbing shrub with 5 m height. It is widespread in southern China. It grows in the sunny forests or forest margins below 1000 m a.s.l. In this paper, we report and describe the complete plastome of E. glabra in order to provide useful genomic data for its systematic research. The complete plastome of E. glabra is 152,555 bp with a typical quadripartite structure of angiosperms. It contains two Inverted Repeats (IRs) of 25,918 bp, a large single-copy (LSC) of 82,408 bp, and a small single-copy (SSC) region of 18,311 bp. The complete plastome contains 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall A/T content in the chloroplast genome of E. glabra is 62.90%. The phylogenetic analysis indicated that E. glabra is close to E. loureirii within Elaeagnaceae. The complete plastome of E. glabra will provide useful resources for the development and utilization of this species and the phylogenetic study of Rosales. |
| first_indexed | 2024-03-11T13:18:04Z |
| format | Article |
| id | doaj.art-e8f236ff6ca44eec990757fbe9cb2fc5 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:04Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e8f236ff6ca44eec990757fbe9cb2fc52023-11-03T11:00:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015128828910.1080/23802359.2019.17024831702483Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant speciesKun-Kun Zhao0Jian-Hua Wang1Zhi-Xin Zhu2Guo-Zheng Shi3Shui-Xing Luo4Hua-Feng Wang5The Experimental Station of Research Institute of Tropical Forestry, Chinese Academy of ForestryKey Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan UniversityKey Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan UniversityThe Experimental Station of Research Institute of Tropical Forestry, Chinese Academy of ForestryThe Experimental Station of Research Institute of Tropical Forestry, Chinese Academy of ForestryKey Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan UniversityElaeagnus glabra is an evergreen vine or climbing shrub with 5 m height. It is widespread in southern China. It grows in the sunny forests or forest margins below 1000 m a.s.l. In this paper, we report and describe the complete plastome of E. glabra in order to provide useful genomic data for its systematic research. The complete plastome of E. glabra is 152,555 bp with a typical quadripartite structure of angiosperms. It contains two Inverted Repeats (IRs) of 25,918 bp, a large single-copy (LSC) of 82,408 bp, and a small single-copy (SSC) region of 18,311 bp. The complete plastome contains 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall A/T content in the chloroplast genome of E. glabra is 62.90%. The phylogenetic analysis indicated that E. glabra is close to E. loureirii within Elaeagnaceae. The complete plastome of E. glabra will provide useful resources for the development and utilization of this species and the phylogenetic study of Rosales.http://dx.doi.org/10.1080/23802359.2019.1702483elaeagnus glabracomplete plastomephylogenygenome structurerosales |
| spellingShingle | Kun-Kun Zhao Jian-Hua Wang Zhi-Xin Zhu Guo-Zheng Shi Shui-Xing Luo Hua-Feng Wang Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species Mitochondrial DNA. Part B. Resources elaeagnus glabra complete plastome phylogeny genome structure rosales |
| title | Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species |
| title_full | Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species |
| title_fullStr | Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species |
| title_full_unstemmed | Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species |
| title_short | Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species |
| title_sort | complete plastome sequence of elaeagnus glabra elaeagnaceae an asian endemic plant species |
| topic | elaeagnus glabra complete plastome phylogeny genome structure rosales |
| url | http://dx.doi.org/10.1080/23802359.2019.1702483 |
| work_keys_str_mv | AT kunkunzhao completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies AT jianhuawang completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies AT zhixinzhu completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies AT guozhengshi completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies AT shuixingluo completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies AT huafengwang completeplastomesequenceofelaeagnusglabraelaeagnaceaeanasianendemicplantspecies |