Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest
Based on the importance and sensitivity of microbial communities to changes in the forest ecosystem, soil microorganisms can be used to indicate the health of the forest system. The metagenome sequencing was used to analyze the changes of microbial communities between natural and plantation <i>...
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MDPI AG
2021-12-01
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| Series: | Microorganisms |
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| Online Access: | https://www.mdpi.com/2076-2607/10/1/42 |
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| author | Yuanyuan Cheng Lexin Zhou Tian Liang Jiayin Man Yinghao Wang Yu Li Hui Chen Taoxiang Zhang |
| author_facet | Yuanyuan Cheng Lexin Zhou Tian Liang Jiayin Man Yinghao Wang Yu Li Hui Chen Taoxiang Zhang |
| author_sort | Yuanyuan Cheng |
| collection | DOAJ |
| description | Based on the importance and sensitivity of microbial communities to changes in the forest ecosystem, soil microorganisms can be used to indicate the health of the forest system. The metagenome sequencing was used to analyze the changes of microbial communities between natural and plantation <i>Castanea henryi</i> forests for understanding the effect of forest types on soil microbial communities. Our result showed the soil microbial diversity and richness were higher in the natural forests than in the plantation. <i>Proteobacteria</i>, <i>Actinobacteria</i>, and <i>Acidobacteria</i> are the dominant categories in the <i>C</i>. <i>henryi</i> rhizosphere, and <i>Proteobacteria</i> and <i>Actinobacteria</i> were significantly enriched in the natural forest while <i>Acidobacteria</i> was significantly enriched in the plantation. Meanwhile, the functional gene diversity and the abundance of functions in the natural forest were higher than that of the plantation. Furthermore, we found that the microbial network in the natural forests had more complex than in the plantation. We also emphasized the low-abundance taxa may play an important role in the network structure. These results clearly showed that microbial communities, in response to different forest types, provide valuable information to manipulate microbiomes to improve soil conditions of plantation. |
| first_indexed | 2024-03-10T00:54:20Z |
| format | Article |
| id | doaj.art-e90e33bd61184279a79116327ef35f4e |
| institution | Directory Open Access Journal |
| issn | 2076-2607 |
| language | English |
| last_indexed | 2024-03-10T00:54:20Z |
| publishDate | 2021-12-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Microorganisms |
| spelling | doaj.art-e90e33bd61184279a79116327ef35f4e2023-11-23T14:46:23ZengMDPI AGMicroorganisms2076-26072021-12-011014210.3390/microorganisms10010042Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural ForestYuanyuan Cheng0Lexin Zhou1Tian Liang2Jiayin Man3Yinghao Wang4Yu Li5Hui Chen6Taoxiang Zhang7Oil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaOil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaOil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaOil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaOil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaOil Tea Research Center of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaBased on the importance and sensitivity of microbial communities to changes in the forest ecosystem, soil microorganisms can be used to indicate the health of the forest system. The metagenome sequencing was used to analyze the changes of microbial communities between natural and plantation <i>Castanea henryi</i> forests for understanding the effect of forest types on soil microbial communities. Our result showed the soil microbial diversity and richness were higher in the natural forests than in the plantation. <i>Proteobacteria</i>, <i>Actinobacteria</i>, and <i>Acidobacteria</i> are the dominant categories in the <i>C</i>. <i>henryi</i> rhizosphere, and <i>Proteobacteria</i> and <i>Actinobacteria</i> were significantly enriched in the natural forest while <i>Acidobacteria</i> was significantly enriched in the plantation. Meanwhile, the functional gene diversity and the abundance of functions in the natural forest were higher than that of the plantation. Furthermore, we found that the microbial network in the natural forests had more complex than in the plantation. We also emphasized the low-abundance taxa may play an important role in the network structure. These results clearly showed that microbial communities, in response to different forest types, provide valuable information to manipulate microbiomes to improve soil conditions of plantation.https://www.mdpi.com/2076-2607/10/1/42natural and plantation <i>Castanea henryi</i> forestsrhizosphere microorganismmolecular ecological network |
| spellingShingle | Yuanyuan Cheng Lexin Zhou Tian Liang Jiayin Man Yinghao Wang Yu Li Hui Chen Taoxiang Zhang Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest Microorganisms natural and plantation <i>Castanea henryi</i> forests rhizosphere microorganism molecular ecological network |
| title | Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest |
| title_full | Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest |
| title_fullStr | Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest |
| title_full_unstemmed | Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest |
| title_short | Deciphering Rhizosphere Microbiome Assembly of <i>Castanea henryi</i> in Plantation and Natural Forest |
| title_sort | deciphering rhizosphere microbiome assembly of i castanea henryi i in plantation and natural forest |
| topic | natural and plantation <i>Castanea henryi</i> forests rhizosphere microorganism molecular ecological network |
| url | https://www.mdpi.com/2076-2607/10/1/42 |
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