Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification
Jakub Jirka,1 Michal Prauzek,1 Ondrej Krejcar,2 Kamil Kuca2,3 1Department of Cybernetics and Biomedical Engineering, Faculty of Electrical Engineering and Computer Science, VSB – Technical University of Ostrava, Ostrava Poruba, Czech Republic; 2Center for Basic and Applied Research, Facul...
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| Format: | Article |
| Language: | English |
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Dove Medical Press
2018-09-01
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| Series: | Neuropsychiatric Disease and Treatment |
| Subjects: | |
| Online Access: | https://www.dovepress.com/automatic-epilepsy-detection-using-fractal-dimensions-segmentation-and-peer-reviewed-article-NDT |
| _version_ | 1818744070673006592 |
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| author | Jirka J Prauzek M Krejcar O Kuca K |
| author_facet | Jirka J Prauzek M Krejcar O Kuca K |
| author_sort | Jirka J |
| collection | DOAJ |
| description | Jakub Jirka,1 Michal Prauzek,1 Ondrej Krejcar,2 Kamil Kuca2,3 1Department of Cybernetics and Biomedical Engineering, Faculty of Electrical Engineering and Computer Science, VSB – Technical University of Ostrava, Ostrava Poruba, Czech Republic; 2Center for Basic and Applied Research, Faculty of Informatics and Management, University of Hradec Kralove, Hradec Kralove, Czech Republic; 3Biomedical Research Center, University Hospital Hradec Kralove, Hradec Kralove, Czech Republic Objective: The most important part of signal processing for classification is feature extraction as a mapping from original input electroencephalographic (EEG) data space to new features space with the biggest class separability value. Features are not only the most important, but also the most difficult task from the classification process as they define input data and classification quality. An ideal set of features would make the classification problem trivial. This article presents novel methods of feature extraction processing and automatic epilepsy seizure classification combining machine learning methods with genetic evolution algorithms.Methods: Classification is performed on EEG data that represent electric brain activity. At first, the signal is preprocessed with digital filtration and adaptive segmentation using fractal dimensions as the only segmentation measure. In the next step, a novel method using genetic programming (GP) combined with support vector machine (SVM) confusion matrix as fitness function weight is used to extract feature vectors compressed into lower dimension space and classify the final result into ictal or interictal epochs.Results: The final application of GP–SVM method improves the discriminatory performance of a classifier by reducing feature dimensionality at the same time. Members of the GP tree structure represent the features themselves and their number is automatically decided by the compression function introduced in this paper. This novel method improves the overall performance of the SVM classification by dramatically reducing the size of input feature vector.Conclusion: According to results, the accuracy of this algorithm is very high and comparable, or even superior to other automatic detection algorithms. In combination with the great efficiency, this algorithm can be used in real-time epilepsy detection applications. From the results of the algorithm’s classification, we can observe high sensitivity, specificity results, except for the Generalized Tonic Clonic Seizure (GTCS). As the next step, the optimization of the compression stage and final SVM evaluation stage is in place. More data need to be obtained on GTCS to improve the overall classification score for GTCS. Keywords: genetic programming, adaptive segmentation, SVM, fractal dimensions, EEG |
| first_indexed | 2024-12-18T02:38:28Z |
| format | Article |
| id | doaj.art-e9ba33d875be4d60b1f1d27abad40d22 |
| institution | Directory Open Access Journal |
| issn | 1178-2021 |
| language | English |
| last_indexed | 2024-12-18T02:38:28Z |
| publishDate | 2018-09-01 |
| publisher | Dove Medical Press |
| record_format | Article |
| series | Neuropsychiatric Disease and Treatment |
| spelling | doaj.art-e9ba33d875be4d60b1f1d27abad40d222022-12-21T21:23:44ZengDove Medical PressNeuropsychiatric Disease and Treatment1178-20212018-09-01Volume 142439244940797Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classificationJirka JPrauzek MKrejcar OKuca KJakub Jirka,1 Michal Prauzek,1 Ondrej Krejcar,2 Kamil Kuca2,3 1Department of Cybernetics and Biomedical Engineering, Faculty of Electrical Engineering and Computer Science, VSB – Technical University of Ostrava, Ostrava Poruba, Czech Republic; 2Center for Basic and Applied Research, Faculty of Informatics and Management, University of Hradec Kralove, Hradec Kralove, Czech Republic; 3Biomedical Research Center, University Hospital Hradec Kralove, Hradec Kralove, Czech Republic Objective: The most important part of signal processing for classification is feature extraction as a mapping from original input electroencephalographic (EEG) data space to new features space with the biggest class separability value. Features are not only the most important, but also the most difficult task from the classification process as they define input data and classification quality. An ideal set of features would make the classification problem trivial. This article presents novel methods of feature extraction processing and automatic epilepsy seizure classification combining machine learning methods with genetic evolution algorithms.Methods: Classification is performed on EEG data that represent electric brain activity. At first, the signal is preprocessed with digital filtration and adaptive segmentation using fractal dimensions as the only segmentation measure. In the next step, a novel method using genetic programming (GP) combined with support vector machine (SVM) confusion matrix as fitness function weight is used to extract feature vectors compressed into lower dimension space and classify the final result into ictal or interictal epochs.Results: The final application of GP–SVM method improves the discriminatory performance of a classifier by reducing feature dimensionality at the same time. Members of the GP tree structure represent the features themselves and their number is automatically decided by the compression function introduced in this paper. This novel method improves the overall performance of the SVM classification by dramatically reducing the size of input feature vector.Conclusion: According to results, the accuracy of this algorithm is very high and comparable, or even superior to other automatic detection algorithms. In combination with the great efficiency, this algorithm can be used in real-time epilepsy detection applications. From the results of the algorithm’s classification, we can observe high sensitivity, specificity results, except for the Generalized Tonic Clonic Seizure (GTCS). As the next step, the optimization of the compression stage and final SVM evaluation stage is in place. More data need to be obtained on GTCS to improve the overall classification score for GTCS. Keywords: genetic programming, adaptive segmentation, SVM, fractal dimensions, EEGhttps://www.dovepress.com/automatic-epilepsy-detection-using-fractal-dimensions-segmentation-and-peer-reviewed-article-NDTgenetic programmingadaptive segmentationSVMfractal dimensionsEEG |
| spellingShingle | Jirka J Prauzek M Krejcar O Kuca K Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification Neuropsychiatric Disease and Treatment genetic programming adaptive segmentation SVM fractal dimensions EEG |
| title | Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification |
| title_full | Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification |
| title_fullStr | Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification |
| title_full_unstemmed | Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification |
| title_short | Automatic epilepsy detection using fractal dimensions segmentation and GP–SVM classification |
| title_sort | automatic epilepsy detection using fractal dimensions segmentation and gp ndash svm classification |
| topic | genetic programming adaptive segmentation SVM fractal dimensions EEG |
| url | https://www.dovepress.com/automatic-epilepsy-detection-using-fractal-dimensions-segmentation-and-peer-reviewed-article-NDT |
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