Comparison of SNP Calling Pipelines and NGS Platforms to Predict the Genomic Regions Harboring Candidate Genes for Nodulation in Cultivated Peanut

Comparison of SNP Calling Pipelines and NGS Platforms to Predict the Genomic Regions Harboring Candidate Genes for Nodulation in Cultivated Peanut

Cultivated peanut (Arachis hypogaea L.) forms root nodules to enable a symbiotic relationship with rhizobia for biological nitrogen fixation. To understand the genetic factors of peanut nodulation, it is fundamental to genetically map and clone the genes involved in nodulation. For genetic mapping,...

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Bibliographic Details
Main Authors: Ze Peng, Zifan Zhao, Josh Paul Clevenger, Ye Chu, Dev Paudel, Peggy Ozias-Akins, Jianping Wang
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-03-01
Series:Frontiers in Genetics
Subjects:
genotyping by sequencing
nodulation
peanut
RNA sequencing
single nucleotide polymorphism
SNP array
Online Access:https://www.frontiersin.org/article/10.3389/fgene.2020.00222/full

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