Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
The Horizon Europe project ISIDORe is dedicated to pandemic preparedness and responsiveness research. It brings together 17 research infrastructures (RIs) and networks to provide a broad range of services to infectious disease researchers. An efficient and structured treatment of data is central to...
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| Format: | Article |
| Language: | English |
| Published: |
Ubiquity Press
2023-09-01
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| Series: | Data Science Journal |
| Subjects: | |
| Online Access: | https://account.datascience.codata.org/index.php/up-j-dsj/article/view/1521 |
| _version_ | 1797656016810147840 |
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| author | Romain David Audrey S. Richard Claire Connellan Katharina B. Lauer Maria Luisa Chiusano Carole Goble Martin Houde Isabel Kemmer Antje Keppler Philippe Lieutaud Christian Ohmann Maria Panagiotopoulou Sara Raza Khan Arina Rybina Stian Soiland-Reyes Charlotte Wit Rudolf Wittner Rafael Andrade Buono Sarah Arnaud Marsh Pauline Audergon Dylan Bonfils Jose-Maria Carazo Remi Charrel Frederik Coppens Wolfgang Fecke Claudia Filippone Eva Garcia Alvarez Sheraz Gul Henning Hermjakob Katja Herzog Petr Holub Lukasz Kozera Allyson L. Lister José López-Coronado Bénédicte Madon Kurt Majcen William Martin Wolfgang Müller Elli Papadopoulou Christine M.A. Prat Paolo Romano Susanna-Assunta Sansone Gary Saunders Niklas Blomberg Jonathan Ewbank |
| author_facet | Romain David Audrey S. Richard Claire Connellan Katharina B. Lauer Maria Luisa Chiusano Carole Goble Martin Houde Isabel Kemmer Antje Keppler Philippe Lieutaud Christian Ohmann Maria Panagiotopoulou Sara Raza Khan Arina Rybina Stian Soiland-Reyes Charlotte Wit Rudolf Wittner Rafael Andrade Buono Sarah Arnaud Marsh Pauline Audergon Dylan Bonfils Jose-Maria Carazo Remi Charrel Frederik Coppens Wolfgang Fecke Claudia Filippone Eva Garcia Alvarez Sheraz Gul Henning Hermjakob Katja Herzog Petr Holub Lukasz Kozera Allyson L. Lister José López-Coronado Bénédicte Madon Kurt Majcen William Martin Wolfgang Müller Elli Papadopoulou Christine M.A. Prat Paolo Romano Susanna-Assunta Sansone Gary Saunders Niklas Blomberg Jonathan Ewbank |
| author_sort | Romain David |
| collection | DOAJ |
| description | The Horizon Europe project ISIDORe is dedicated to pandemic preparedness and responsiveness research. It brings together 17 research infrastructures (RIs) and networks to provide a broad range of services to infectious disease researchers. An efficient and structured treatment of data is central to ISIDORe’s aim to furnish seamless access to its multidisciplinary catalogue of services, and to ensure that users’ results are treated FAIRly. ISIDORe therefore requires a data management plan (DMP) covering both access management and research outputs, applicable over a broad range of disciplines, and compatible with the constraints and existing practices of its diverse partners. Here, we describe how, to achieve that aim, we undertook an iterative, step-by-step, process to build a community-approved living document, identifying good practices and processes, on the basis of use cases, presented as proof of concepts. International fora such as the RDA and EOSC, and primarily the BY-COVID project, furnished registries, tools and online data platforms, as well as standards, and the support of data scientists. Together, these elements provide a path for building an umbrella, FAIR-compliant DMP, aligned as fully as possible with FAIR principles, which could also be applied as a framework for data management harmonisation in other large-scale, challenge-driven projects. Finally, we discuss how data management and reuse can be further improved through the use of knowledge models when writing DMPs and, how, in the future, an inter-RI network of data stewards could contribute to the establishment of a community of practice, to be integrated subsequently into planned trans-RI competence centres. |
| first_indexed | 2024-03-11T17:23:04Z |
| format | Article |
| id | doaj.art-eb2f47806c214f36a5c71427ca52a03b |
| institution | Directory Open Access Journal |
| issn | 1683-1470 |
| language | English |
| last_indexed | 2024-03-11T17:23:04Z |
| publishDate | 2023-09-01 |
| publisher | Ubiquity Press |
| record_format | Article |
| series | Data Science Journal |
| spelling | doaj.art-eb2f47806c214f36a5c71427ca52a03b2023-10-19T08:07:11ZengUbiquity PressData Science Journal1683-14702023-09-0122525210.5334/dsj-2023-035162Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic PreparednessRomain David0https://orcid.org/0000-0003-4073-7456Audrey S. Richard1https://orcid.org/0000-0002-0207-0139Claire Connellan2https://orcid.org/0000-0001-6449-8512Katharina B. Lauer3https://orcid.org/0000-0002-4347-7525Maria Luisa Chiusano4https://orcid.org/0000-0002-6296-7132Carole Goble5https://orcid.org/0000-0003-1219-2137Martin Houde6https://orcid.org/0000-0001-8630-204XIsabel Kemmer7https://orcid.org/0000-0002-8799-4671Antje Keppler8https://orcid.org/0000-0003-4358-2269Philippe Lieutaud9https://orcid.org/0000-0002-5080-3456Christian Ohmann10https://orcid.org/0000-0002-5919-1003Maria Panagiotopoulou11https://orcid.org/0000-0002-4221-7254Sara Raza Khan12https://orcid.org/0000-0003-1587-6171Arina Rybina13https://orcid.org/0000-0002-5609-5710Stian Soiland-Reyes14https://orcid.org/0000-0001-9842-9718Charlotte Wit15https://orcid.org/0000-0002-5461-8354Rudolf Wittner16https://orcid.org/0000-0002-0003-2024Rafael Andrade Buono17https://orcid.org/0000-0002-6675-3836Sarah Arnaud Marsh18https://orcid.org/0000-0003-4194-043XPauline Audergon19https://orcid.org/0000-0002-1624-7388Dylan Bonfils20https://orcid.org/0000-0002-2734-3420Jose-Maria Carazo21https://orcid.org/0000-0003-0788-8447Remi Charrel22https://orcid.org/0000-0002-7675-8251Frederik Coppens23https://orcid.org/0000-0001-6565-5145Wolfgang Fecke24https://orcid.org/0000-0003-1917-0037Claudia Filippone25https://orcid.org/0000-0001-5483-7656Eva Garcia Alvarez26https://orcid.org/0000-0002-3522-5088Sheraz Gul27https://orcid.org/0000-0003-2543-1643Henning Hermjakob28https://orcid.org/0000-0001-8479-0262Katja Herzog29https://orcid.org/0000-0002-1389-8118Petr Holub30https://orcid.org/0000-0002-5358-616XLukasz Kozera31https://orcid.org/0000-0002-9015-4518Allyson L. Lister32https://orcid.org/0000-0002-7702-4495José López-Coronado33https://orcid.org/0000-0001-7442-8091Bénédicte Madon34https://orcid.org/0000-0001-8608-3895Kurt Majcen35https://orcid.org/0000-0002-4041-4887William Martin36https://orcid.org/0000-0003-4839-1752Wolfgang Müller37https://orcid.org/0000-0002-4980-3512Elli Papadopoulou38https://orcid.org/0000-0002-0893-8509Christine M.A. Prat39https://orcid.org/0000-0002-6963-8673Paolo Romano40https://orcid.org/0000-0003-4694-3883Susanna-Assunta Sansone41https://orcid.org/0000-0001-5306-5690Gary Saunders42https://orcid.org/0000-0002-7468-0008Niklas Blomberg43https://orcid.org/0000-0003-4155-5910Jonathan Ewbank44https://orcid.org/0000-0002-1257-6862European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SDDept. of Agricultural Sciences, University of Naples Federico II, and Stazione Zoologica Anton Dorhn, NaplesThe University of Manchester, Oxford Road, Manchester, M13 9PLEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesEuro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 HeidelbergEuro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 HeidelbergEuropean Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR190 ] – Aix Marseille Université, IRD 190, INSERM U1207European Clinical Research Infrastructure Network (ECRIN), Kaiserswerther Str. 70, 40477 DüsseldorfEuropean Clinical Research Infrastructure Network (ECRIN), 5-7 rue Watt 75013 ParisEuropean Clinical Research Infrastructure Network (ECRIN), 5-7 rue Watt 75013 ParisEuro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 HeidelbergDepartment of Computer Science, The University of Manchester, Manchester, M13 9PL, UK; Informatics Institute, University of Amsterdam, LAB42, Science Park 900, 1098 XH AmsterdamEU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 BerlinBiobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 GrazVIB-UGent Center for Plant Systems Biology, GhentInstitut Pasteur (IP), Genetics and Genomics of Insect Vectors Unit (Infravec) & Department of Anthropologie and Ecology of Disease Unit (Sonar-Global), 25-28 rue du Docteur Roux, 75724 Paris Cedex 15Instruct-ERIC, Oxford House, Parkway Court, John Smith Drive, Oxford, OX4 2JYEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesCNB-CSIC, Instruct-ES, Campus Universidad Autónoma, 28049, MadridEuropean Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR 190 ] – Aix Marseille Université, IRD 190, INSERM U1207, MarseilleVIB-UGent Center for Plant Systems Biology, GhentEU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 BerlinEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesBBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 GrazFraunhofer Institute for Translational Medicine and Pharmacology ITMP, Schnackenburgallee 114, 22525 Hamburg, Germany Fraunhofer; Cluster of Excellence for Immune-Mediated Diseases CIMD, Schnackenburgallee 114, 22525 HamburgEuropean Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, HinxtonEU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 BerlinBBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 GrazBBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 GrazData Readiness Group, Oxford e-Research Centre, University of OxfordCECT-University of Valencia, Agustín Escardino 9,46980 Paterna (Valencia)La Rochelle Université, Littoral, Environnement et Sociétés (LIENSs), UMR 7266 CNRS – La Rochelle University, 2 rue Olympe de Gouges, 17000 La RochelleBBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 GrazEuropean Vaccine Initiative,Vossstrasse 2, Geb. 4040, 69115 HeidelbergHeidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, 69118 HeidelbergATHENA Research Center/OpenAIRE, Artemidos 6 & Epidavrou, 15125, AthensEuropean Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR190 ] – Aix Marseille Université, IRD 190, INSERM U1207, MarseilleIRCCS Ospedale Policlinico San Martino, Largo Rosanna Benzi 10, 16132 GenovaData Readiness Group, Oxford e-Research Centre, University of OxfordEATRIS-ERIC, De Boelelaan 1118, 1081 HZ AmsterdamELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SDEuropean Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 BruxellesThe Horizon Europe project ISIDORe is dedicated to pandemic preparedness and responsiveness research. It brings together 17 research infrastructures (RIs) and networks to provide a broad range of services to infectious disease researchers. An efficient and structured treatment of data is central to ISIDORe’s aim to furnish seamless access to its multidisciplinary catalogue of services, and to ensure that users’ results are treated FAIRly. ISIDORe therefore requires a data management plan (DMP) covering both access management and research outputs, applicable over a broad range of disciplines, and compatible with the constraints and existing practices of its diverse partners. Here, we describe how, to achieve that aim, we undertook an iterative, step-by-step, process to build a community-approved living document, identifying good practices and processes, on the basis of use cases, presented as proof of concepts. International fora such as the RDA and EOSC, and primarily the BY-COVID project, furnished registries, tools and online data platforms, as well as standards, and the support of data scientists. Together, these elements provide a path for building an umbrella, FAIR-compliant DMP, aligned as fully as possible with FAIR principles, which could also be applied as a framework for data management harmonisation in other large-scale, challenge-driven projects. Finally, we discuss how data management and reuse can be further improved through the use of knowledge models when writing DMPs and, how, in the future, an inter-RI network of data stewards could contribute to the establishment of a community of practice, to be integrated subsequently into planned trans-RI competence centres.https://account.datascience.codata.org/index.php/up-j-dsj/article/view/1521data management plandmpresearch data managementrdmdata management qualityresearch datapandemicoutbreakdata services harmonisationdata reusefair principlesdata stewards |
| spellingShingle | Romain David Audrey S. Richard Claire Connellan Katharina B. Lauer Maria Luisa Chiusano Carole Goble Martin Houde Isabel Kemmer Antje Keppler Philippe Lieutaud Christian Ohmann Maria Panagiotopoulou Sara Raza Khan Arina Rybina Stian Soiland-Reyes Charlotte Wit Rudolf Wittner Rafael Andrade Buono Sarah Arnaud Marsh Pauline Audergon Dylan Bonfils Jose-Maria Carazo Remi Charrel Frederik Coppens Wolfgang Fecke Claudia Filippone Eva Garcia Alvarez Sheraz Gul Henning Hermjakob Katja Herzog Petr Holub Lukasz Kozera Allyson L. Lister José López-Coronado Bénédicte Madon Kurt Majcen William Martin Wolfgang Müller Elli Papadopoulou Christine M.A. Prat Paolo Romano Susanna-Assunta Sansone Gary Saunders Niklas Blomberg Jonathan Ewbank Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness Data Science Journal data management plan dmp research data management rdm data management quality research data pandemic outbreak data services harmonisation data reuse fair principles data stewards |
| title | Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness |
| title_full | Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness |
| title_fullStr | Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness |
| title_full_unstemmed | Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness |
| title_short | Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness |
| title_sort | umbrella data management plans to integrate fair data lessons from the isidore and by covid consortia for pandemic preparedness |
| topic | data management plan dmp research data management rdm data management quality research data pandemic outbreak data services harmonisation data reuse fair principles data stewards |
| url | https://account.datascience.codata.org/index.php/up-j-dsj/article/view/1521 |
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