K-mer Content Changes with Node Degree in Promoter–Enhancer Network of Mouse ES Cells

K-mer Content Changes with Node Degree in Promoter–Enhancer Network of Mouse ES Cells

Maps of Hi-C contacts between promoters and enhancers can be analyzed as networks, with cis-regulatory regions as nodes and their interactions as edges. We checked if in the published promoter–enhancer network of mouse embryonic stem (ES) cells the differences in the node type (promoter or enhancer)...

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Bibliographic Details
Main Authors: Kinga Szyman, Bartek Wilczyński, Michał Dąbrowski
Format: Article
Language:English
Published: MDPI AG 2021-07-01
Series:International Journal of Molecular Sciences
Subjects:
Hi-C
4-mer
dinucleotide
CpG
S/MAR
embryonic stem cell
Online Access:https://www.mdpi.com/1422-0067/22/15/8067

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