Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
The complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1375873 |
| _version_ | 1797640816882089984 |
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| author | Liu Zhu Tian Xin-Min Jin Zhi-Min Dong Ming Zhang Jun-Sheng Du Jian-Yu |
| author_facet | Liu Zhu Tian Xin-Min Jin Zhi-Min Dong Ming Zhang Jun-Sheng Du Jian-Yu |
| author_sort | Liu Zhu |
| collection | DOAJ |
| description | The complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (32.6%), C (25.2%), T (28.8%), and G (13.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the Ussuri shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The five Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations. |
| first_indexed | 2024-03-11T13:36:50Z |
| format | Article |
| id | doaj.art-ee0ee8afc79b40e4b8ee3e9102687788 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:50Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
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| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ee0ee8afc79b40e4b8ee3e91026877882023-11-02T15:42:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012264564710.1080/23802359.2017.13758731375873Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from ChinaLiu Zhu0Tian Xin-Min1Jin Zhi-Min2Dong Ming3Zhang Jun-Sheng4Du Jian-Yu5Mudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityThe complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (32.6%), C (25.2%), T (28.8%), and G (13.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the Ussuri shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The five Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations.http://dx.doi.org/10.1080/23802359.2017.1375873control regionmitogenomephylogenetic treesthe ussuri shrew |
| spellingShingle | Liu Zhu Tian Xin-Min Jin Zhi-Min Dong Ming Zhang Jun-Sheng Du Jian-Yu Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China Mitochondrial DNA. Part B. Resources control region mitogenome phylogenetic trees the ussuri shrew |
| title | Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China |
| title_full | Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China |
| title_fullStr | Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China |
| title_full_unstemmed | Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China |
| title_short | Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China |
| title_sort | sequencing and analysis of the complete mitochondrial genome of the ussuri shrew sorex mirabilis from china |
| topic | control region mitogenome phylogenetic trees the ussuri shrew |
| url | http://dx.doi.org/10.1080/23802359.2017.1375873 |
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