Standard and Specific Compression Techniques for DNA Microarray Images
We review the state of the art in DNA microarray image compression and provide original comparisons between standard and microarray-specific compression techniques that validate and expand previous work. First, we describe the most relevant approaches published in the literature and classify them ac...
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
MDPI AG
2012-02-01
|
| Series: | Algorithms |
| Subjects: | |
| Online Access: | http://www.mdpi.com/1999-4893/5/1/30/ |
| _version_ | 1819084085661794304 |
|---|---|
| author | Michael W. Marcellin Joan Serra-Sagristà Miguel Hernández-Cabronero Ian Blanes |
| author_facet | Michael W. Marcellin Joan Serra-Sagristà Miguel Hernández-Cabronero Ian Blanes |
| author_sort | Michael W. Marcellin |
| collection | DOAJ |
| description | We review the state of the art in DNA microarray image compression and provide original comparisons between standard and microarray-specific compression techniques that validate and expand previous work. First, we describe the most relevant approaches published in the literature and classify them according to the stage of the typical image compression process where each approach makes its contribution, and then we summarize the compression results reported for these microarray-specific image compression schemes. In a set of experiments conducted for this paper, we obtain new results for several popular image coding techniques that include the most recent coding standards. Prediction-based schemes CALIC and JPEG-LS are the best-performing standard compressors, but are improved upon by the best microarray-specific technique, Battiato’s CNN-based scheme. |
| first_indexed | 2024-12-21T20:42:51Z |
| format | Article |
| id | doaj.art-ef004e35da9a4d7aa82a3b635adbb02c |
| institution | Directory Open Access Journal |
| issn | 1999-4893 |
| language | English |
| last_indexed | 2024-12-21T20:42:51Z |
| publishDate | 2012-02-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Algorithms |
| spelling | doaj.art-ef004e35da9a4d7aa82a3b635adbb02c2022-12-21T18:50:55ZengMDPI AGAlgorithms1999-48932012-02-0151304910.3390/a5010030Standard and Specific Compression Techniques for DNA Microarray ImagesMichael W. MarcellinJoan Serra-SagristàMiguel Hernández-CabroneroIan BlanesWe review the state of the art in DNA microarray image compression and provide original comparisons between standard and microarray-specific compression techniques that validate and expand previous work. First, we describe the most relevant approaches published in the literature and classify them according to the stage of the typical image compression process where each approach makes its contribution, and then we summarize the compression results reported for these microarray-specific image compression schemes. In a set of experiments conducted for this paper, we obtain new results for several popular image coding techniques that include the most recent coding standards. Prediction-based schemes CALIC and JPEG-LS are the best-performing standard compressors, but are improved upon by the best microarray-specific technique, Battiato’s CNN-based scheme.http://www.mdpi.com/1999-4893/5/1/30/microarray imagesmicroarray image compressionimage coding standardsJPEG2000 |
| spellingShingle | Michael W. Marcellin Joan Serra-Sagristà Miguel Hernández-Cabronero Ian Blanes Standard and Specific Compression Techniques for DNA Microarray Images Algorithms microarray images microarray image compression image coding standards JPEG2000 |
| title | Standard and Specific Compression Techniques for DNA Microarray Images |
| title_full | Standard and Specific Compression Techniques for DNA Microarray Images |
| title_fullStr | Standard and Specific Compression Techniques for DNA Microarray Images |
| title_full_unstemmed | Standard and Specific Compression Techniques for DNA Microarray Images |
| title_short | Standard and Specific Compression Techniques for DNA Microarray Images |
| title_sort | standard and specific compression techniques for dna microarray images |
| topic | microarray images microarray image compression image coding standards JPEG2000 |
| url | http://www.mdpi.com/1999-4893/5/1/30/ |
| work_keys_str_mv | AT michaelwmarcellin standardandspecificcompressiontechniquesfordnamicroarrayimages AT joanserrasagrista standardandspecificcompressiontechniquesfordnamicroarrayimages AT miguelhernandezcabronero standardandspecificcompressiontechniquesfordnamicroarrayimages AT ianblanes standardandspecificcompressiontechniquesfordnamicroarrayimages |