Universal scaling relation and criticality in metabolism and growth of Escherichia coli

The metabolic network plays a crucial role in regulating bacterial metabolism and growth, but it is subject to inherent molecular stochasticity. Previous studies have utilized flux balance analysis and the maximum entropy method to predict metabolic fluxes and growth rates, while the underlying prin...

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Bibliographic Details
Main Authors: Shaohua Guan, Zhichao Zhang, Zihan Zhang, Hualin Shi
Format: Article
Language:English
Published: American Physical Society 2024-01-01
Series:Physical Review Research
Online Access:http://doi.org/10.1103/PhysRevResearch.6.013035
Description
Summary:The metabolic network plays a crucial role in regulating bacterial metabolism and growth, but it is subject to inherent molecular stochasticity. Previous studies have utilized flux balance analysis and the maximum entropy method to predict metabolic fluxes and growth rates, while the underlying principles governing bacterial metabolism and growth, especially the criticality hypothesis, remain unclear. In this study, we employ a maximum entropy approach to investigate the universality in various constraint-based metabolic networks of Escherichia coli. Our findings reveal the existence of universal scaling relations across different nutritional environments and metabolic network models, similarly to the universality observed in physics. By analyzing single-cell data, we confirm that metabolism of E. coli operates close to the state with maximum Fisher information, which serves as a signature of criticality. This critical state provides functional advantages such as high sensitivity and long-range correlation. Moreover, we demonstrate that a metabolic system operating at criticality takes a compromise solution between growth and adaptation, thereby serving as a survival strategy in fluctuating environments.
ISSN:2643-1564