CLARITY: a Shiny app for interactive visualisation of the bovine physical-genetic map

CLARITY: a Shiny app for interactive visualisation of the bovine physical-genetic map

The arrangement of markers on the genome can be defined in either physical or linkage terms. While a physical map represents the inter-marker distances in base pairs, a genetic (or linkage) map pictures the recombination rate between pairs of markers. High-resolution genetic maps are key elements fo...

Bibliografiset tiedot
Päätekijät:	Nina Melzer, Saber Qanbari, Xi Ding, Dörte Wittenburg
Aineistotyyppi:	Artikkeli
Kieli:	English
Julkaistu:	Frontiers Media S.A. 2023-05-01
Sarja:	Frontiers in Genetics
Aiheet:	single nucleotide polymorphism linkage recombination rate education mapping function
Linkit:	https://www.frontiersin.org/articles/10.3389/fgene.2023.1082782/full

Samankaltaisia teoksia

Design of experiments for fine-mapping quantitative trait loci in livestock populations
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Julkaistu: (2020-06-01)

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Julkaistu: (2005-03-01)

A linkage disequilibrium-based approach to position unmapped SNPs in crop species
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Julkaistu: (2021-10-01)

A Case of Two Full Sisters Share Identical Genotypes on the X Chromosome
Tekijä: Jinpei Zhang, et al.
Julkaistu: (2024-09-01)

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)
Tekijä: Rami-Petteri Apuli, et al.
Julkaistu: (2020-01-01)

Pod and Seed Trait QTL Identification To Assist Breeding for Peanut Market Preferences
Tekijä: Carolina Chavarro, et al.
Julkaistu: (2020-07-01)

ShinyCore: An R/Shiny program for establishing core collection based on single nucleotide polymorphism data
Tekijä: Steven Kim, et al.
Julkaistu: (2023-10-01)

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina
Tekijä: Michael ePernaci, et al.
Julkaistu: (2014-09-01)

Fine mapping of Loci on BTA2 and BTA26 Associated with Bovine Viral Diarrhea Persistent Infection and Linked with Bovine Respiratory Disease in Cattle
Tekijä: Ricardo eZanella, et al.
Julkaistu: (2011-11-01)

Identification and functional validation of a new gene conferring resistance to Soybean Mosaic Virus strains SC4 and SC20 in soybean
Tekijä: Muhammad Muzzafar Raza, et al.
Julkaistu: (2025-01-01)

Regional Heritability Mapping of Quantitative Trait Loci Controlling Traits Related to Growth and Productivity in Popcorn (<i>Zea mays</i> L.)
Tekijä: Gabrielle Sousa Mafra, et al.
Julkaistu: (2021-09-01)

Construction of SNP genetic maps based on targeted next-generation sequencing and QTL mapping of vital agronomic traits in faba bean (Vicia faba L.)
Tekijä: Meng-wei LI, et al.
Julkaistu: (2023-09-01)

Advances in faba bean genetics and genomics
Tekijä: Donal Martin O'Sullivan, et al.
Julkaistu: (2016-08-01)

Patterns of linkage disequilibrium and haplotype distribution in disease candidate genes
Tekijä: Shen Hui, et al.
Julkaistu: (2004-05-01)

Identification of Single Nucleotide Polymorphism Marker and Association Analysis of Marbling Score in Gene of Hanwoo
Tekijä: Seung-Chang Kim, et al.
Julkaistu: (2016-01-01)

Construction of a high-density genetic map and mapping of growth related QTLs in the grass carp (Ctenopharyngodon idellus)
Tekijä: Xiaoli Huang, et al.
Julkaistu: (2020-04-01)

ShinyGAStool: A user-friendly tool for candidate gene association studies
Tekijä: Thomas J. Hoffmann, et al.
Julkaistu: (2023-02-01)

QTL analysis for carcass composition and meat quality traits on SSC7q1.1-q1.4 region in Large White × Meishan F2 pigs
Tekijä: W. Huang, et al.
Julkaistu: (2012-06-01)

Mapping Loci That Control Tuber and Foliar Symptoms Caused by PVY in Autotetraploid Potato (Solanum tuberosum L.)
Tekijä: Washington L. da Silva, et al.
Julkaistu: (2017-11-01)

Construction of a highly saturated Genetic Map for Vitis by Next-generation Restriction Site-associated DNA Sequencing
Tekijä: Junchi Zhu, et al.
Julkaistu: (2018-12-01)

High-Density Linkage Map and Mapping for Sex and Growth-Related Traits of Largemouth Bass (Micropterus salmoides)
Tekijä: Chuanju Dong, et al.
Julkaistu: (2019-10-01)

Genotyping Rs2274625 Marker in NPHS2 Gene Associated with Nephrotic Syndrome in Isfahan Population
Tekijä: L Esmaili Chamgordani, et al.
Julkaistu: (2015-12-01)

Extent of linkage disequilibrium and effective population size of Korean Yorkshire swine
Tekijä: Donghyun Shin, et al.
Julkaistu: (2018-12-01)

A genetic linkage map of Pleurotus tuoliensis integrated with physical mapping of the de novo sequenced genome and the mating type loci
Tekijä: Wei Gao, et al.
Julkaistu: (2018-01-01)

QTL Mapping for Agronomic Important Traits in Well-Adapted Wheat Cultivars
Tekijä: Jingxian Liu, et al.
Julkaistu: (2024-04-01)

Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design
Tekijä: Shashi N. Goonetilleke, et al.
Julkaistu: (2018-01-01)

QTL Mapping for Gummy Stem Blight Resistance in Watermelon (<i>Citrullus</i> spp.)
Tekijä: Eun Su Lee, et al.
Julkaistu: (2021-03-01)

Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development
Tekijä: Anja eBus, et al.
Julkaistu: (2014-09-01)

Construction of a High-Density Genetic Map and Identification of Quantitative Trait Loci Linked to Fruit Quality Traits in Apricots Using Specific-Locus Amplified Fragment Sequencing
Tekijä: Qiuping Zhang, et al.
Julkaistu: (2022-02-01)

Association between polymorphisms of homologous recombination repair pathway genes and the risk of colorectal cancer
Tekijä: ZHUO Changlong, et al.
Julkaistu: (2019-09-01)

High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.)
Tekijä: Kuang Zhang, et al.
Julkaistu: (2019-11-01)

Grouping of genomic markers in populations with family structure
Tekijä: Dörte Wittenburg, et al.
Julkaistu: (2021-02-01)

Comparison of Antidepressant Efficacy-related SNPs Among Taiwanese and Four Populations in the HapMap Database
Tekijä: Mei-Hung Chi, et al.
Julkaistu: (2011-07-01)

Genome-wide population structure and evolutionary history of the Frizarta dairy sheep1
Tekijä: A. Kominakis, et al.
Julkaistu: (2017-01-01)

Assessing the effects of rare alleles and linkage disequilibrium on estimates of genetic diversity in the chicken populations
Tekijä: N.V. Dementieva, et al.
Julkaistu: (2021-03-01)

Population parameters incorporated into genome-wide tagSNP selection
Tekijä: A.P. Silesian, et al.
Julkaistu: (2013-01-01)

Linkage disequilibrium in Angus, Charolais and crossbred beef cattle
Tekijä: Duc eLu, et al.
Julkaistu: (2012-08-01)

Multiple Linkage Disequilibrium Mapping Methods to Validate Additive Quantitative Trait Loci in Korean Native Cattle (Hanwoo)
Tekijä: Yi Li, et al.
Julkaistu: (2015-07-01)

Vitamin D and Vitamin D Receptor FokI, ApaI, and BsmI Gene Polymorphisms and their Relation with the Risk of Breast Carcinoma: A Case-control Study
Tekijä: Ashok Kumar Dogra, et al.
Julkaistu: (2024-04-01)

Using Linkage Maps as a Tool To Determine Patterns of Chromosome Synteny in the Genus Salvelinus
Tekijä: Matthew C. Hale, et al.
Julkaistu: (2017-11-01)