The complete chloroplast genome sequence of Vernonia amygdalina Delile
Vernonia amygdalina Delile is widely used in folkloric medicine for the treatment of various diseases. In this study, the complete chloroplast genome of V. amygdalina Delile was reported, which was assembled and annotated base on genome high-throughput sequencing data. This work provided the clues f...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1902411 |
| _version_ | 1797638976717193216 |
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| author | Fang Zhou Keke Lan Xiangrong Li Yu Mei Shike Cai Jihua Wang |
| author_facet | Fang Zhou Keke Lan Xiangrong Li Yu Mei Shike Cai Jihua Wang |
| author_sort | Fang Zhou |
| collection | DOAJ |
| description | Vernonia amygdalina Delile is widely used in folkloric medicine for the treatment of various diseases. In this study, the complete chloroplast genome of V. amygdalina Delile was reported, which was assembled and annotated base on genome high-throughput sequencing data. This work provided the clues for the taxonomy of the herb and the potential to utilize the chloroplast genome sequence as a new study target. The length of V. amygdalina Delile chloroplast genome was 153,133bp, with two single-copy regions, each has the length of 84,245bp and 13,152bp respectively. This region were separated by two inverted repeat regions with 27,868bp in length. It was predicted to consist of 131 genes in total, including 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes with GC content at 37.68%. Phylogenetic analysis by RAxML (Random Axelerated Maximum Likelikhood) showed V. amygdalina Delile is closest to Sonchus webbii in Compositae. |
| first_indexed | 2024-03-11T13:10:11Z |
| format | Article |
| id | doaj.art-efd539e97df547f7a293938170121afe |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:11Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-efd539e97df547f7a293938170121afe2023-11-03T14:16:08ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-01631134113510.1080/23802359.2021.19024111902411The complete chloroplast genome sequence of Vernonia amygdalina DelileFang Zhou0Keke Lan1Xiangrong Li2Yu Mei3Shike Cai4Jihua Wang5Key Laboratory of Crops Genetic Improvement of Guangdong, Crops Research Institute, Guangdong Academy of Agricultural SciencesGuangdong Academy of Agricultural SciencesAgricultural and Rural Bureau of Luhe CountyKey Laboratory of Crops Genetic Improvement of Guangdong, Crops Research Institute, Guangdong Academy of Agricultural SciencesKey Laboratory of Crops Genetic Improvement of Guangdong, Crops Research Institute, Guangdong Academy of Agricultural SciencesKey Laboratory of Crops Genetic Improvement of Guangdong, Crops Research Institute, Guangdong Academy of Agricultural SciencesVernonia amygdalina Delile is widely used in folkloric medicine for the treatment of various diseases. In this study, the complete chloroplast genome of V. amygdalina Delile was reported, which was assembled and annotated base on genome high-throughput sequencing data. This work provided the clues for the taxonomy of the herb and the potential to utilize the chloroplast genome sequence as a new study target. The length of V. amygdalina Delile chloroplast genome was 153,133bp, with two single-copy regions, each has the length of 84,245bp and 13,152bp respectively. This region were separated by two inverted repeat regions with 27,868bp in length. It was predicted to consist of 131 genes in total, including 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes with GC content at 37.68%. Phylogenetic analysis by RAxML (Random Axelerated Maximum Likelikhood) showed V. amygdalina Delile is closest to Sonchus webbii in Compositae.http://dx.doi.org/10.1080/23802359.2021.1902411vernonia amygdalina delilechloroplast genomemedical plant |
| spellingShingle | Fang Zhou Keke Lan Xiangrong Li Yu Mei Shike Cai Jihua Wang The complete chloroplast genome sequence of Vernonia amygdalina Delile Mitochondrial DNA. Part B. Resources vernonia amygdalina delile chloroplast genome medical plant |
| title | The complete chloroplast genome sequence of Vernonia amygdalina Delile |
| title_full | The complete chloroplast genome sequence of Vernonia amygdalina Delile |
| title_fullStr | The complete chloroplast genome sequence of Vernonia amygdalina Delile |
| title_full_unstemmed | The complete chloroplast genome sequence of Vernonia amygdalina Delile |
| title_short | The complete chloroplast genome sequence of Vernonia amygdalina Delile |
| title_sort | complete chloroplast genome sequence of vernonia amygdalina delile |
| topic | vernonia amygdalina delile chloroplast genome medical plant |
| url | http://dx.doi.org/10.1080/23802359.2021.1902411 |
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