Machine learning approaches to predict age from accelerometer records of physical activity at biobank scale

Physical activity improves quality of life and protects against age-related diseases. With age, physical activity tends to decrease, increasing vulnerability to disease in the elderly. In the following, we trained a neural network to predict age from 115,456 one week-long 100Hz wrist accelerometer r...

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Bibliographic Details
Main Authors: Alan Le Goallec, Sasha Collin, M’Hamed Jabri, Samuel Diai, Théo Vincent, Chirag J. Patel
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2023-01-01
Series:PLOS Digital Health
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931315/?tool=EBI
Description
Summary:Physical activity improves quality of life and protects against age-related diseases. With age, physical activity tends to decrease, increasing vulnerability to disease in the elderly. In the following, we trained a neural network to predict age from 115,456 one week-long 100Hz wrist accelerometer recordings from the UK Biobank (mean absolute error = 3.7±0.2 years), using a variety of data structures to capture the complexity of real-world activity. We achieved this performance by preprocessing the raw frequency data as 2,271 scalar features, 113 time series, and four images. We defined accelerated aging for a participant as being predicted older than one’s actual age and identified both genetic and environmental exposure factors associated with the new phenotype. We performed a genome wide association on the accelerated aging phenotypes to estimate its heritability (h_g2 = 12.3±0.9%) and identified ten single nucleotide polymorphisms in close proximity to genes in a histone and olfactory cluster on chromosome six (e.g HIST1H1C, OR5V1). Similarly, we identified biomarkers (e.g blood pressure), clinical phenotypes (e.g chest pain), diseases (e.g hypertension), environmental (e.g smoking), and socioeconomic (e.g income and education) variables associated with accelerated aging. Physical activity-derived biological age is a complex phenotype associated with both genetic and non-genetic factors. Author summary Physical activity improves quality of life and is also an important protective factor for prevalent age-related diseases and outcomes, such as diabetes and mortality. With age, physical activity tends to decrease, increasing vulnerability to disease in the elderly. Does physical activity measured from digital health devices predict one’s biological age? Biological age, as contrast to chronological age (the time that has elapsed since birth), is an indicator of the biological changes that accrue through time that are hypothesized to be one causal factor for age-related diseases. In the following, we trained machine learning models to predict age from 115,456 one week-long wrist accelerometer recordings from participants of the UK Biobank. We then found genetic, environmental, and behavioral factors associated with accelerated age, the difference between biological and chronological age, adding to the evidence of the biological plausibility of our new predictor. If reversable, summarizing complex physical activity into a biological age predictor may be a way of observing the effect of preventative efforts in real-time.
ISSN:2767-3170