Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species
Background: Reports on Pseudomonas species associated with Chilean native plants and their diversity are scarce. The draft genome of Pseudomonas sp. RGM 2987 isolated from the rhizosphere of Stevia philippiana, a native Chilean plant from the Altiplano, is presented. Results: The assembled genome fe...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-01-01
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| Series: | Electronic Journal of Biotechnology |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S0717345822000434 |
| _version_ | 1797959627645648896 |
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| author | Matías Guerra Jorge Carrasco-Fernández Jorge H. Valdés Marcelo Panichini Jean Franco Castro |
| author_facet | Matías Guerra Jorge Carrasco-Fernández Jorge H. Valdés Marcelo Panichini Jean Franco Castro |
| author_sort | Matías Guerra |
| collection | DOAJ |
| description | Background: Reports on Pseudomonas species associated with Chilean native plants and their diversity are scarce. The draft genome of Pseudomonas sp. RGM 2987 isolated from the rhizosphere of Stevia philippiana, a native Chilean plant from the Altiplano, is presented. Results: The assembled genome features 6,161,133 bp, a G+C content of 61.3%, and 5,350 predicted open reading frames. dDDH, and ANIb differences between RGM 2987 and the closest relatives support its classification as a new species within the Pseudomonas genus. Genome mining and functional classification revealed the presence of genes involved in cell function and metabolism as well as plant-growth promotion, including those for indole acetic acid production, phosphate solubilization, and ethylene concentration. Conclusions: The draft genome of Pseudomonas sp. RGM 2987 provides insights on its phylogeny and classification as a new species and shed light on its potential as a plant-biostimulant, expanding our knowledge on Pseudomonas biodiversity worldwide and, specifically, for those strains associated with native Chilean plants.How to cite: Guerra M, Carrasco-Fernández J, Valdés JH, et al. Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species. Electron J Biotechnol 2022;61. https://doi.org/10.1016/j.ejbt.2022.10.001. |
| first_indexed | 2024-04-11T00:34:22Z |
| format | Article |
| id | doaj.art-f0bf22d5212b41b99cfbceec6a59d46e |
| institution | Directory Open Access Journal |
| issn | 0717-3458 |
| language | English |
| last_indexed | 2024-04-11T00:34:22Z |
| publishDate | 2023-01-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Electronic Journal of Biotechnology |
| spelling | doaj.art-f0bf22d5212b41b99cfbceec6a59d46e2023-01-07T04:16:32ZengElsevierElectronic Journal of Biotechnology0717-34582023-01-0161913Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel speciesMatías Guerra0Jorge Carrasco-Fernández1Jorge H. Valdés2Marcelo Panichini3Jean Franco Castro4Instituto de Investigaciones Agropecuarias (INIA), Avenida Vicente Méndez 515, Chillán, ChileInstituto de Investigaciones Agropecuarias (INIA), Avenida Vicente Méndez 515, Chillán, ChileCenter for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Av. República 330, Santiago, ChileInstituto de Investigaciones Agropecuarias (INIA), Avenida Vicente Méndez 515, Chillán, ChileInstituto de Investigaciones Agropecuarias (INIA), Avenida Vicente Méndez 515, Chillán, Chile; Corresponding author.Background: Reports on Pseudomonas species associated with Chilean native plants and their diversity are scarce. The draft genome of Pseudomonas sp. RGM 2987 isolated from the rhizosphere of Stevia philippiana, a native Chilean plant from the Altiplano, is presented. Results: The assembled genome features 6,161,133 bp, a G+C content of 61.3%, and 5,350 predicted open reading frames. dDDH, and ANIb differences between RGM 2987 and the closest relatives support its classification as a new species within the Pseudomonas genus. Genome mining and functional classification revealed the presence of genes involved in cell function and metabolism as well as plant-growth promotion, including those for indole acetic acid production, phosphate solubilization, and ethylene concentration. Conclusions: The draft genome of Pseudomonas sp. RGM 2987 provides insights on its phylogeny and classification as a new species and shed light on its potential as a plant-biostimulant, expanding our knowledge on Pseudomonas biodiversity worldwide and, specifically, for those strains associated with native Chilean plants.How to cite: Guerra M, Carrasco-Fernández J, Valdés JH, et al. Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species. Electron J Biotechnol 2022;61. https://doi.org/10.1016/j.ejbt.2022.10.001.http://www.sciencedirect.com/science/article/pii/S0717345822000434BiostimulantChilean AltiplanoDraft genomePlant growth-promoting bacteriaPseudomonasPseudomonas novel species |
| spellingShingle | Matías Guerra Jorge Carrasco-Fernández Jorge H. Valdés Marcelo Panichini Jean Franco Castro Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species Electronic Journal of Biotechnology Biostimulant Chilean Altiplano Draft genome Plant growth-promoting bacteria Pseudomonas Pseudomonas novel species |
| title | Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| title_full | Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| title_fullStr | Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| title_full_unstemmed | Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| title_short | Draft genome of Pseudomonas sp. RGM 2987 isolated from Stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| title_sort | draft genome of pseudomonas sp rgm 2987 isolated from stevia philippiana roots reveals its potential as a plant biostimulant and potentially constitutes a novel species |
| topic | Biostimulant Chilean Altiplano Draft genome Plant growth-promoting bacteria Pseudomonas Pseudomonas novel species |
| url | http://www.sciencedirect.com/science/article/pii/S0717345822000434 |
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