The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae)
Sphagneticola trilobata is one of the world's worst invasive alien species. The paucity of genetic information for this species has made it difficult for studies on the underlying genetic mechanism of its invasiveness. Herein, we report the de novo chloroplast genome assembly of S. trilobata us...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1483767 |
| _version_ | 1797640652790431744 |
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| author | Yubing Zhou Wei Lun Ng Renchao Zhou Wei Wu |
| author_facet | Yubing Zhou Wei Lun Ng Renchao Zhou Wei Wu |
| author_sort | Yubing Zhou |
| collection | DOAJ |
| description | Sphagneticola trilobata is one of the world's worst invasive alien species. The paucity of genetic information for this species has made it difficult for studies on the underlying genetic mechanism of its invasiveness. Herein, we report the de novo chloroplast genome assembly of S. trilobata using Illumina whole-genome sequencing data. The chloroplast genome was 151,939 bp in length, with a large single copy (LSC) region of 83,405 bp, a small single copy (SSC) region of 18,448 bp, separated by two inverted repeat (IR) regions of 25,044 bp each. A total of 134 genes were annotated for the chloroplast genome assembly, including 86 protein-encoding genes. Phylogenetic analysis suggested close relationship between S. trilobata and Eclipta prostrata. |
| first_indexed | 2024-03-11T13:34:56Z |
| format | Article |
| id | doaj.art-f1470b789a37419493103abb06552c02 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:56Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f1470b789a37419493103abb06552c022023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013274074110.1080/23802359.2018.14837671483767The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae)Yubing Zhou0Wei Lun Ng1Renchao Zhou2Wei Wu3Sun Yat-Sen UniversitySun Yat-Sen UniversitySun Yat-Sen UniversitySun Yat-Sen UniversitySphagneticola trilobata is one of the world's worst invasive alien species. The paucity of genetic information for this species has made it difficult for studies on the underlying genetic mechanism of its invasiveness. Herein, we report the de novo chloroplast genome assembly of S. trilobata using Illumina whole-genome sequencing data. The chloroplast genome was 151,939 bp in length, with a large single copy (LSC) region of 83,405 bp, a small single copy (SSC) region of 18,448 bp, separated by two inverted repeat (IR) regions of 25,044 bp each. A total of 134 genes were annotated for the chloroplast genome assembly, including 86 protein-encoding genes. Phylogenetic analysis suggested close relationship between S. trilobata and Eclipta prostrata.http://dx.doi.org/10.1080/23802359.2018.1483767sphagneticolaasteraceaebiological invasioncomplete chloroplast genomeautomated assembly |
| spellingShingle | Yubing Zhou Wei Lun Ng Renchao Zhou Wei Wu The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) Mitochondrial DNA. Part B. Resources sphagneticola asteraceae biological invasion complete chloroplast genome automated assembly |
| title | The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) |
| title_full | The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) |
| title_fullStr | The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) |
| title_short | The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae) |
| title_sort | complete chloroplast genome sequence of sphagneticola trilobata asteraceae |
| topic | sphagneticola asteraceae biological invasion complete chloroplast genome automated assembly |
| url | http://dx.doi.org/10.1080/23802359.2018.1483767 |
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