Nerve Segmentation with Deep Learning from Label-Free Endoscopic Images Obtained Using Coherent Anti-Stokes Raman Scattering

Semantic segmentation with deep learning to extract nerves from label-free endoscopic images obtained using coherent anti-Stokes Raman scattering (CARS) for nerve-sparing surgery is described. We developed a CARS rigid endoscope in order to identify the exact location of peripheral nerves in surgery...

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Bibliographic Details
Main Authors: Naoki Yamato, Mana Matsuya, Hirohiko Niioka, Jun Miyake, Mamoru Hashimoto
Format: Article
Language:English
Published: MDPI AG 2020-07-01
Series:Biomolecules
Subjects:
Online Access:https://www.mdpi.com/2218-273X/10/7/1012
Description
Summary:Semantic segmentation with deep learning to extract nerves from label-free endoscopic images obtained using coherent anti-Stokes Raman scattering (CARS) for nerve-sparing surgery is described. We developed a CARS rigid endoscope in order to identify the exact location of peripheral nerves in surgery. Myelinated nerves are visualized with a CARS lipid signal in a label-free manner. Because the lipid distribution includes other tissues as well as nerves, nerve segmentation is required to achieve nerve-sparing surgery. We propose using U-Net with a VGG16 encoder as a deep learning model and pre-training with fluorescence images, which visualize the lipid distribution similar to CARS images, before fine-tuning with a small dataset of CARS endoscopy images. For nerve segmentation, we used 24 CARS and 1,818 fluorescence nerve images of three rabbit prostates. We achieved label-free nerve segmentation with a mean accuracy of 0.962 and an <inline-formula> <math display="inline"> <semantics> <msub> <mi>F</mi> <mn>1</mn> </msub> </semantics> </math> </inline-formula> value of 0.860. Pre-training on fluorescence images significantly improved the performance of nerve segmentation in terms of the mean accuracy and <inline-formula> <math display="inline"> <semantics> <msub> <mi>F</mi> <mn>1</mn> </msub> </semantics> </math> </inline-formula> value (<inline-formula> <math display="inline"> <semantics> <mrow> <mi>p</mi> <mo><</mo> <mn>0.05</mn> </mrow> </semantics> </math> </inline-formula>). Nerve segmentation of label-free endoscopic images will allow for safer endoscopic surgery, while reducing dysfunction and improving prognosis after surgery.
ISSN:2218-273X