RNA-seq as a powerful tool for Penaeid shrimp genetic progress
The sequences of all different RNA transcripts present in a cell or tissue that are related to the gene expression and its functional control represent what it is called a transcriptome. The transcripts vary between cells, tissues, ontogenetic and environmental conditions and the knowledge that can...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2014-08-01
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| Series: | Frontiers in Genetics |
| Subjects: | |
| Online Access: | http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00298/full |
| _version_ | 1819267815469744128 |
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| author | Camilla Alves Santos Danielly Veloso Blanck Patrícia Domingues Freitas |
| author_facet | Camilla Alves Santos Danielly Veloso Blanck Patrícia Domingues Freitas |
| author_sort | Camilla Alves Santos |
| collection | DOAJ |
| description | The sequences of all different RNA transcripts present in a cell or tissue that are related to the gene expression and its functional control represent what it is called a transcriptome. The transcripts vary between cells, tissues, ontogenetic and environmental conditions and the knowledge that can be gained through them is of a solid relevance for genetic applications in aquaculture. Some of the techniques used in transcriptome studies, such as microarrays, are being replaced for next-generation sequencing approaches. RNA-seq emerges as a new possibility for the transcriptome complexity analysis as well as for the candidate genes and polymorphisms identification of penaeid species. Thus, it may also help to understand the determination of complex traits mechanisms and genetic improvement of stocks. In this review, it is first introduced an overview of transcriptome analysis by RNA-seq, followed by a discussion of how this approach may be applied in genetic progress within penaeid stocks. |
| first_indexed | 2024-12-23T21:23:10Z |
| format | Article |
| id | doaj.art-f1bcdac45b1b493e81de2afc1b4d1055 |
| institution | Directory Open Access Journal |
| issn | 1664-8021 |
| language | English |
| last_indexed | 2024-12-23T21:23:10Z |
| publishDate | 2014-08-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Genetics |
| spelling | doaj.art-f1bcdac45b1b493e81de2afc1b4d10552022-12-21T17:30:42ZengFrontiers Media S.A.Frontiers in Genetics1664-80212014-08-01510.3389/fgene.2014.00298105272RNA-seq as a powerful tool for Penaeid shrimp genetic progressCamilla Alves Santos0Danielly Veloso Blanck1Patrícia Domingues Freitas2Federal University of Sao CarlosFederal University of Sao CarlosFederal University of Sao CarlosThe sequences of all different RNA transcripts present in a cell or tissue that are related to the gene expression and its functional control represent what it is called a transcriptome. The transcripts vary between cells, tissues, ontogenetic and environmental conditions and the knowledge that can be gained through them is of a solid relevance for genetic applications in aquaculture. Some of the techniques used in transcriptome studies, such as microarrays, are being replaced for next-generation sequencing approaches. RNA-seq emerges as a new possibility for the transcriptome complexity analysis as well as for the candidate genes and polymorphisms identification of penaeid species. Thus, it may also help to understand the determination of complex traits mechanisms and genetic improvement of stocks. In this review, it is first introduced an overview of transcriptome analysis by RNA-seq, followed by a discussion of how this approach may be applied in genetic progress within penaeid stocks.http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00298/fullcandidate genesdifferential expression analysisdifferential phenotypehigh-throughput transcriptomepenaeidae transcriptome |
| spellingShingle | Camilla Alves Santos Danielly Veloso Blanck Patrícia Domingues Freitas RNA-seq as a powerful tool for Penaeid shrimp genetic progress Frontiers in Genetics candidate genes differential expression analysis differential phenotype high-throughput transcriptome penaeidae transcriptome |
| title | RNA-seq as a powerful tool for Penaeid shrimp genetic progress |
| title_full | RNA-seq as a powerful tool for Penaeid shrimp genetic progress |
| title_fullStr | RNA-seq as a powerful tool for Penaeid shrimp genetic progress |
| title_full_unstemmed | RNA-seq as a powerful tool for Penaeid shrimp genetic progress |
| title_short | RNA-seq as a powerful tool for Penaeid shrimp genetic progress |
| title_sort | rna seq as a powerful tool for penaeid shrimp genetic progress |
| topic | candidate genes differential expression analysis differential phenotype high-throughput transcriptome penaeidae transcriptome |
| url | http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00298/full |
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