Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis
In this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2171244 |
| _version_ | 1797638541831831552 |
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| author | Tiezhu Yang Chenxi Tan Wenhao Sun Dongpu Li Liangjie Zhao Fan Li |
| author_facet | Tiezhu Yang Chenxi Tan Wenhao Sun Dongpu Li Liangjie Zhao Fan Li |
| author_sort | Tiezhu Yang |
| collection | DOAJ |
| description | In this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and 17 intergenic spacer regions throughout the mitogenome of T. albiventris. The A + T content of the mitogenome is 60.93%. All PCGs have the same start codon of the standard ATG, excepting for that of cytochrome c oxidase 1 (cox1) which is the GTG. A phylogenetic analysis with another 15 species of the Cyprinidae was performed using MrBayes and IQtree, based on the amino acid sequences of 13 mitochondrial PCGs. The results indicated that T. albiventris shares a close ancestry with Tanichthys albonubes. |
| first_indexed | 2024-03-11T13:05:05Z |
| format | Article |
| id | doaj.art-f1e0c48449ca4505a592969be74a6f0e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:05Z |
| publishDate | 2023-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f1e0c48449ca4505a592969be74a6f0e2023-11-03T14:44:06ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-02-018220721010.1080/23802359.2023.21712442171244Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysisTiezhu Yang0Chenxi Tan1Wenhao Sun2Dongpu Li3Liangjie Zhao4Fan Li5College of Fisheries, Xinyang Agriculture and Forestry UniversityCollege of Fisheries, Xinyang Agriculture and Forestry UniversityCollege of Fisheries, Xinyang Agriculture and Forestry UniversityCollege of Fisheries, Xinyang Agriculture and Forestry UniversityCollege of Fisheries, Xinyang Agriculture and Forestry UniversityBranch of Shanghai Science and Technology Museum, Shanghai Natural History MuseumIn this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and 17 intergenic spacer regions throughout the mitogenome of T. albiventris. The A + T content of the mitogenome is 60.93%. All PCGs have the same start codon of the standard ATG, excepting for that of cytochrome c oxidase 1 (cox1) which is the GTG. A phylogenetic analysis with another 15 species of the Cyprinidae was performed using MrBayes and IQtree, based on the amino acid sequences of 13 mitochondrial PCGs. The results indicated that T. albiventris shares a close ancestry with Tanichthys albonubes.http://dx.doi.org/10.1080/23802359.2023.2171244tanichthyidaetanichthys albiventristanichthys albonubesmitochondrial genomephylogenetic analysis |
| spellingShingle | Tiezhu Yang Chenxi Tan Wenhao Sun Dongpu Li Liangjie Zhao Fan Li Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis Mitochondrial DNA. Part B. Resources tanichthyidae tanichthys albiventris tanichthys albonubes mitochondrial genome phylogenetic analysis |
| title | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
| title_full | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
| title_fullStr | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
| title_full_unstemmed | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
| title_short | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
| title_sort | characterization of the complete mitochondrial genome sequence of tanichthys albiventris and phylogenetic analysis |
| topic | tanichthyidae tanichthys albiventris tanichthys albonubes mitochondrial genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2023.2171244 |
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