Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small s...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2014366 |
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| author | Carlos I. Arbizu Carla L. Saldaña Rubén D. Ferro-Mauricio Julio C. Chávez-Galarza Jordan Herrera Sergio Contreras-Liza Juan C. Guerrero-Abad Jorge L. Maicelo |
| author_facet | Carlos I. Arbizu Carla L. Saldaña Rubén D. Ferro-Mauricio Julio C. Chávez-Galarza Jordan Herrera Sergio Contreras-Liza Juan C. Guerrero-Abad Jorge L. Maicelo |
| author_sort | Carlos I. Arbizu |
| collection | DOAJ |
| description | In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe. |
| first_indexed | 2024-03-11T13:07:03Z |
| format | Article |
| id | doaj.art-f22a3e43685e4da69ae11fe32dc7e966 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:03Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f22a3e43685e4da69ae11fe32dc7e9662023-11-03T14:36:01ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-017115615810.1080/23802359.2021.20143662014366Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepperCarlos I. Arbizu0Carla L. Saldaña1Rubén D. Ferro-Mauricio2Julio C. Chávez-Galarza3Jordan Herrera4Sergio Contreras-Liza5Juan C. Guerrero-Abad6Jorge L. Maicelo7Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)Facultad de Ingeniería Agrarias, Industrias Alimentarias y Ambiental, Universidad Nacional José Faustino Sánchez CarriónDirección de Recursos Genéticos y Biotecnología, Instituto Nacional de Innovación Agraria (INIA)Dirección de Desarrollo Tecnológico Agrario, Instituto Nacional de Innovación Agraria (INIA)In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.http://dx.doi.org/10.1080/23802359.2021.2014366ngschloroplastgenetic resourcesarnauchophylogenomics |
| spellingShingle | Carlos I. Arbizu Carla L. Saldaña Rubén D. Ferro-Mauricio Julio C. Chávez-Galarza Jordan Herrera Sergio Contreras-Liza Juan C. Guerrero-Abad Jorge L. Maicelo Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper Mitochondrial DNA. Part B. Resources ngs chloroplast genetic resources arnaucho phylogenomics |
| title | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_full | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_fullStr | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_full_unstemmed | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_short | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_sort | characterization of the complete chloroplast genome of a peruvian landrace of capsicum chinense jacq solanaceae arnaucho chili pepper |
| topic | ngs chloroplast genetic resources arnaucho phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2021.2014366 |
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