The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern
The complete chloroplast (cp) genome sequence of Cibotium barometz, an endangered CITES medicinal fern, was determined by Illumina sequencing. Its genome is a circular molecule of 166,027 bp in length, including a pair of inverted repeats (IRs) of 29,158 bp, a large single-copy (LSC) region of 85,66...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1462128 |
| _version_ | 1797640726006202368 |
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| author | Shanshan Liu Zhen Wang Ting Wang Yingjuan Su |
| author_facet | Shanshan Liu Zhen Wang Ting Wang Yingjuan Su |
| author_sort | Shanshan Liu |
| collection | DOAJ |
| description | The complete chloroplast (cp) genome sequence of Cibotium barometz, an endangered CITES medicinal fern, was determined by Illumina sequencing. Its genome is a circular molecule of 166,027 bp in length, including a pair of inverted repeats (IRs) of 29,158 bp, a large single-copy (LSC) region of 85,665 bp, and a small single-copy (SSC) region of 22,046 bp. The genome encodes 118 unique genes, involving 84 protein-coding genes, 28 tRNA genes, four rRNA genes, and two pseudogenes. Maximum likelihood tree showed that C. barometz was closely related to Alsophila spinulosa. This investigation lays solid foundations for endangered medicinal resource conservation and fern phylogenetic studies. |
| first_indexed | 2024-03-11T13:35:54Z |
| format | Article |
| id | doaj.art-f278533cad2c4a60961eedc6864948e8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:54Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f278533cad2c4a60961eedc6864948e82023-11-02T15:57:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013146446510.1080/23802359.2018.14621281462128The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fernShanshan Liu0Zhen Wang1Ting Wang2Yingjuan Su3Sun Yat-sen UniversityNanjing Agricultural UniversitySouth China Agricultural UniversitySun Yat-sen UniversityThe complete chloroplast (cp) genome sequence of Cibotium barometz, an endangered CITES medicinal fern, was determined by Illumina sequencing. Its genome is a circular molecule of 166,027 bp in length, including a pair of inverted repeats (IRs) of 29,158 bp, a large single-copy (LSC) region of 85,665 bp, and a small single-copy (SSC) region of 22,046 bp. The genome encodes 118 unique genes, involving 84 protein-coding genes, 28 tRNA genes, four rRNA genes, and two pseudogenes. Maximum likelihood tree showed that C. barometz was closely related to Alsophila spinulosa. This investigation lays solid foundations for endangered medicinal resource conservation and fern phylogenetic studies.http://dx.doi.org/10.1080/23802359.2018.1462128cibotium barometzchloroplast genomeendangered cites medicinal fernphylogenetic analysis |
| spellingShingle | Shanshan Liu Zhen Wang Ting Wang Yingjuan Su The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern Mitochondrial DNA. Part B. Resources cibotium barometz chloroplast genome endangered cites medicinal fern phylogenetic analysis |
| title | The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern |
| title_full | The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern |
| title_fullStr | The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern |
| title_full_unstemmed | The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern |
| title_short | The complete chloroplast genome of Cibotium barometz (Cibotiaceae), an endangered CITES medicinal fern |
| title_sort | complete chloroplast genome of cibotium barometz cibotiaceae an endangered cites medicinal fern |
| topic | cibotium barometz chloroplast genome endangered cites medicinal fern phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1462128 |
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