Bayesian estimation of genomic copy number with single nucleotide polymorphism genotyping arrays

Bayesian estimation of genomic copy number with single nucleotide polymorphism genotyping arrays

<p>Abstract</p> <p>Background</p> <p>The identification of copy number aberration in the human genome is an important area in cancer research. We develop a model for determining genomic copy numbers using high-density single nucleotide polymorphism genotyping microarray...

Full description

Bibliographic Details
Main Authors:	Davis Caleb, Vannucci Marina, Wang Jian, Villagran Alejandro, Guo Beibei, Man Tsz-Kwong, Lau Ching, Guerra Rudy
Format:	Article
Language:	English
Published:	BMC 2010-12-01
Series:	BMC Research Notes
Online Access:	http://www.biomedcentral.com/1756-0500/3/350

Similar Items

Analysis of somatic copy number alterations in biliary tract carcinoma using a single nucleotide polymorphism array
by: Yoshihiro Shioi, et al.
Published: (2022-01-01)

Retrospective analysis of the sex chromosomal copy number variations in 186 fetuses using single nucleotide polymorphism arrays
by: Haiwei Wang, et al.
Published: (2022-12-01)

Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat
by: Jianting Chu, et al.
Published: (2020-02-01)

Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle
by: Pierce Rafter, et al.
Published: (2020-03-01)

Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array
by: Qian You, et al.
Published: (2018-02-01)

Metaphase cytogenetics and single nucleotide polymorphism arrays in myeloid malignancies
by: Fernanda Borges da Silva, et al.
Published: (2015-04-01)

Imputation of single nucleotide polymorphism genotypes in ungenotyped sport horses from the genotypes of their progeny
by: J.L. Doyle, et al.
Published: (2024-09-01)

Genome-wide analysis of copy number changes and loss of heterozygosity in myelodysplastic syndrome with del(5q) using high-density single nucleotide polymorphism arrays.
by: Wang, L, et al.
Published: (2008)

Genome-wide analysis of copy number changes and loss of heterozygosity in myelodysplastic syndrome with del(5q) using high-density single nucleotide polymorphism arrays
by: Li Wang, et al.
Published: (2008-07-01)

Single-nucleotide polymorphism array-based karyotyping of acute promyelocytic leukemia.
by: Inés Gómez-Seguí, et al.
Published: (2014-01-01)

Single Nucleotide Polymorphism discovery and genotyping within the chicken Tapasin gene
by: P. Mariani, et al.
Published: (2010-01-01)

A nanoliter fluidic platform for large-scale single nucleotide polymorphism genotyping
by: Douglas G. Roberts, et al.
Published: (2009-03-01)

High-Throughput Single Nucleotide Polymorphism Genotyping by Fluorescent 5′ Exonuclease Assay
by: Phillip A. Morin, et al.
Published: (1999-09-01)

Improving single nucleotide polymorphisms genotyping accuracy for dihydropyrimidine dehydrogenase testing in pharmacogenetics
by: Annalaura Montella, et al.
Published: (2024-04-01)

Sex and Menopause Modify the Effect of Single Nucleotide Polymorphism Genotypes on Fibrosis in NAFLD
by: Kara Wegermann, et al.
Published: (2021-04-01)

Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array
by: Cardin, N, et al.
Published: (2011)

Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array.
by: Cardin, N, et al.
Published: (2011)

CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays
by: Balsa Alejandro, et al.
Published: (2010-05-01)

Clinical findings and genetic analysis of patients with copy number variants involving 17p13.3 using a single nucleotide polymorphism array: a single-center experience
by: Bin Liang, et al.
Published: (2022-12-01)

Genome-wide analysis of neuroblastomas using high-density single nucleotide polymorphism arrays.
by: Rani E George, et al.
Published: (2007-02-01)

Single Nucleotide Polymorphism Genotyping Using Allele-Specific PCR and Fluorescence Melting Curves
by: Audrey C. Papp, et al.
Published: (2003-05-01)

Agrigenomic Diversity Unleashed: Current Single Nucleotide Polymorphism Genotyping Methods for the Agricultural Sciences
by: Roger D. Lawrie, et al.
Published: (2023-10-01)

Single nucleotide and copy number polymorphisms of the SULT1A1 gene in a South African Tswana population group
by: Hlengiwe P. Mbongwa, et al.
Published: (2011-10-01)

Single Nucleotide Polymorphism array analysis for fetuses from balanced translocation carriers at the second trimester
by: Xiaoqing Wu, et al.
Published: (2024-10-01)

Single nucleotide polymorphism genomic arrays analysis of t(8;21) acute myeloid leukemia cells
by: Tadayuki Akagi, et al.
Published: (2009-09-01)

Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
by: Lee Hyunju, et al.
Published: (2011-05-01)

Comprehensive genotyping analysis of single nucleotide polymorphisms responsible for beef marbling in Japanese Black cattle
by: Shinji Sasazaki, et al.
Published: (2024-02-01)

Bacsnp: Using Single Nucleotide Polymorphism (SNP) Specificities and Frequencies to Identify Genotype Composition in Baculoviruses
by: Jörg T. Wennmann, et al.
Published: (2020-06-01)

Association of Single-Nucleotide Polymorphisms in the VDR Gene with Tuberculosis and Infection of Beijing Genotype Mycobacterium tuberculosis
by: Yu J, et al.
Published: (2023-05-01)

Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing
by: Li Xuehui, et al.
Published: (2012-10-01)

Aneuploidy and recombination in the human preimplantation embryo. Copy number variation analysis and genome-wide polymorphism genotyping
by: Konstantinidis, M, et al.
Published: (2019)

Detection of Single-Nucleotide Polymorphism
by: Weikuan Gu, et al.
Published: (1998-05-01)

Single nucleotide polymorphism microarray analysis of karyotypically normal acute myeloid leukemia reveals frequent copy number neutral loss of heterozygosity
by: Anne Tyybäkinoja, et al.
Published: (2008-04-01)

Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model
by: Gerstein Mark B, et al.
Published: (2010-10-01)

Designing and evaluating a cost‐effective single nucleotide polymorphism liquid array for Chinese native chickens
by: Yifan Liu, et al.
Published: (2023-11-01)

High-resolution single-nucleotide polymorphism array-profiling in myeloproliferative neoplasms identifies novel genomic aberrations
by: Frank Stegelmann, et al.
Published: (2010-04-01)

Genetic testing for fetal loss of heterozygosity using single nucleotide polymorphism array and whole-exome sequencing
by: Huili Xue, et al.
Published: (2024-01-01)

Using single nucleotide polymorphism array for prenatal diagnosis in a large multicenter study in Southern China
by: Meiying Cai, et al.
Published: (2023-05-01)

Single-Nucleotide Polymorphism Array Technique Generating Valuable Risk-Stratification Information for Patients With Myelodysplastic Syndromes
by: Xia Xiao, et al.
Published: (2020-07-01)

Single Nucleotide Polymorphisms (SNPs) Genotypic Profiling Of Malay Patients With And Without Helicobacter Pylori Infection In Kelantan
by: Maran, Sathiya
Published: (2012)