Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies
Background In metabarcoding analyses, the taxonomic assignment is crucial to place sequencing data in biological and ecological contexts. This fundamental step depends on a reference database, which should have a good taxonomic coverage to avoid unassigned sequences. However, this goal is rarely ach...
المؤلفون الرئيسيون: | Francesco Mugnai, Federica Costantini, Anne Chenuil, Michèle Leduc, José Miguel Gutiérrez Ortega, Emese Meglécz |
---|---|
التنسيق: | مقال |
اللغة: | English |
منشور في: |
PeerJ Inc.
2023-01-01
|
سلاسل: | PeerJ |
الموضوعات: | |
الوصول للمادة أونلاين: | https://peerj.com/articles/14616.pdf |
مواد مشابهة
-
How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation
حسب: Gilles San Martin, وآخرون
منشور في: (2024-01-01) -
To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography
حسب: Adrià Antich, وآخرون
منشور في: (2021-04-01) -
An improved statistical model for taxonomic assignment of metagenomics
حسب: Yujing Yao, وآخرون
منشور في: (2018-10-01) -
Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities
حسب: Janina Schenk, وآخرون
منشور في: (2020-03-01) -
Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode
حسب: Bachir Balech, وآخرون
منشور في: (2018-06-01)