Optimising oligonucleotide array design for ChIP-on-chip

Optimising oligonucleotide array design for ChIP-on-chip

Bibliographic Details
Main Authors:	Birney Ewan, Green Roland, Denissov Sergei, Kurtz Stefan, Zhang Xinmin, Graef Stefan, Nielsen Fiona, Flicek Paul, Huynen Martijn, Stunnenberg Henk
Format:	Article
Language:	English
Published:	BMC 2007-11-01
Series:	BMC Bioinformatics

Similar Items

CATCHprofiles: clustering and alignment tool for ChIP profiles.
by: Fiona G G Nielsen, et al.
Published: (2012-01-01)

Impact of artefact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.
by: Thomas Samuel Carroll, et al.
Published: (2014-04-01)

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
by: Karchenko Peter V, et al.
Published: (2011-02-01)

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
by: Pagès Hervé, et al.
Published: (2010-05-01)

CASSys: an integrated software-system for the interactive analysis of ChIP-seq data
by: Alawi Malik, et al.
Published: (2011-06-01)

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
by: Mathur, Divya, et al.
Published: (2010)

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies [version 1; referees: 2 approved]
by: Fiona C. Wardle, et al.
Published: (2015-07-01)

Normalization and experimental design for ChIP-chip data
by: Alekseyenko Artyom A, et al.
Published: (2007-06-01)

ChIP on Chip: surprising results are often artifacts
by: Skarstad Kirsten, et al.
Published: (2010-07-01)

Analyzing ChIP-chip data using bioconductor.
by: Joern Toedling, et al.
Published: (2008-11-01)

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
by: Minucci Saverio, et al.
Published: (2011-10-01)

Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
by: Sachs Laurent, et al.
Published: (2009-12-01)

Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology
by: Stefano Amatori, et al.
Published: (2018-11-01)

ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation.
by: Robert C Akkers, et al.
Published: (2010-01-01)

Simplified ChIP-exo assays
by: Matthew J. Rossi, et al.
Published: (2018-07-01)

Protocol: methodology for chromatin immunoprecipitation (ChIP) in <it>Chlamydomonas reinhardtii</it>
by: Strenkert Daniela, et al.
Published: (2011-11-01)

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
by: Sperling Silke, et al.
Published: (2007-11-01)

Parameter estimation for robust HMM analysis of ChIP-chip data
by: Humburg Peter, et al.
Published: (2008-08-01)

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
by: Huber Wolfgang, et al.
Published: (2007-06-01)

Bayesian modeling of ChIP-chip data using latent variables
by: Tian Yanan, et al.
Published: (2009-10-01)

Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
by: Kuroda Mitzi I, et al.
Published: (2010-07-01)

A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques.
by: Haiyan Lei, et al.
Published: (2010-12-01)

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data
by: Tomasz Dzida, et al.
Published: (2017-09-01)

De novo ChIP-seq analysis
by: He, Xin, et al.
Published: (2015)

Dual agarose magnetic (DAM) ChIP
by: Balakrishnan Lata, et al.
Published: (2009-12-01)

Modeling ChIP sequencing in silico with applications.
by: Zhengdong D Zhang, et al.
Published: (2008-08-01)

ChIPseqR: analysis of ChIP-seq experiments
by: Helliwell Chris A, et al.
Published: (2011-01-01)

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
by: Tresch Achim, et al.
Published: (2010-04-01)

Inferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out Data
by: Haoyu Cheng, et al.
Published: (2009-10-01)

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies
by: Adriaens Michiel E, et al.
Published: (2012-01-01)

Inferring Transcriptional Interactions by the Optimal Integration of ChIp-chip and Knock-out Data
by: Haoyu Cheng, et al.
Published: (2009-01-01)

Model-based Analysis of ChIP-Seq (MACS)
by: Zhang, Yong, et al.
Published: (2010)

A flexible ChIP-sequencing simulation toolkit
by: Zheng, An, et al.
Published: (2021)

In silico pooling of ChIP-seq control experiments.
by: Guannan Sun, et al.
Published: (2014-01-01)

Shape-based peak identification for ChIP-Seq
by: Evans Steven N, et al.
Published: (2011-01-01)

ChIPulate: A comprehensive ChIP-seq simulation pipeline.
by: Vishaka Datta, et al.
Published: (2019-03-01)

CAST-ChIP Maps Cell-Type-Specific Chromatin States in the Drosophila Central Nervous System
by: Tamás Schauer, et al.
Published: (2013-10-01)

A Brazilian version of the "Children's Interview for Psychiatric Syndromes" (ChIPS) A versão brasileira do "Children's Interview for Psychiatric Syndromes" (ChIPS)
by: Isabella G. S. de Souza, et al.
Published: (2009-01-01)

Novel sequential ChIP and simplified basic ChIP protocols for promoter co-occupancy and target gene identification in human embryonic stem cells
by: Elayaperumal Anuratha, et al.
Published: (2009-06-01)

ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
by: Porter Christopher J, et al.
Published: (2007-09-01)