Data in support of genetic architecture of glucosinolate variations in Brassica napus
The transcriptome-based GWAS approach, Associative Transcriptomics (AT), which was employed to uncover the genetic basis controlling quantitative variation of glucosinolates in Brassica napus vegetative tissues is described. This article includes the phenotypic data of leaf and root glucosinolate (G...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2019-08-01
|
| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340919307577 |
| _version_ | 1828525774514159616 |
|---|---|
| author | Varanya Kittipol Zhesi He Lihong Wang Tim Doheny-Adams Swen Langer Ian Bancroft |
| author_facet | Varanya Kittipol Zhesi He Lihong Wang Tim Doheny-Adams Swen Langer Ian Bancroft |
| author_sort | Varanya Kittipol |
| collection | DOAJ |
| description | The transcriptome-based GWAS approach, Associative Transcriptomics (AT), which was employed to uncover the genetic basis controlling quantitative variation of glucosinolates in Brassica napus vegetative tissues is described. This article includes the phenotypic data of leaf and root glucosinolate (GSL) profiles across a diversity panel of 288 B. napus genotypes, as well as information on population structure and levels of GSLs grouped by crop types. Moreover, data on genetic associations of single nucleotide polymorphism (SNP) markers and gene expression markers (GEMs) for the major GSL types are presented in detail, while Manhattan plots and QQ plots for the associations of individual GSLs are also included. Root genetic association are supported by differential expression analysis generated from root RNA-seq. For further interpretation and details, please see the related research article entitled ‘Genetic architecture of glucosinolate variation in Brassica napus’ (Kittipol et al., 2019). Keywords: Glucosinolates, Genetic associations, Associative transcriptomics, SNP markers, Gene expression markers, Population structure, Oilseed rape, Brassica napus |
| first_indexed | 2024-12-11T21:12:51Z |
| format | Article |
| id | doaj.art-f49e473b93c042aea31db266aab172d5 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-11T21:12:51Z |
| publishDate | 2019-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-f49e473b93c042aea31db266aab172d52022-12-22T00:50:41ZengElsevierData in Brief2352-34092019-08-0125Data in support of genetic architecture of glucosinolate variations in Brassica napusVaranya Kittipol0Zhesi He1Lihong Wang2Tim Doheny-Adams3Swen Langer4Ian Bancroft5Department of Biology, University of York, Heslington, York, YO10 5DD, UKDepartment of Biology, University of York, Heslington, York, YO10 5DD, UKDepartment of Biology, University of York, Heslington, York, YO10 5DD, UKDepartment of Biology, University of York, Heslington, York, YO10 5DD, UKDepartment of Biology, University of York, Heslington, York, YO10 5DD, UKCorresponding author.; Department of Biology, University of York, Heslington, York, YO10 5DD, UKThe transcriptome-based GWAS approach, Associative Transcriptomics (AT), which was employed to uncover the genetic basis controlling quantitative variation of glucosinolates in Brassica napus vegetative tissues is described. This article includes the phenotypic data of leaf and root glucosinolate (GSL) profiles across a diversity panel of 288 B. napus genotypes, as well as information on population structure and levels of GSLs grouped by crop types. Moreover, data on genetic associations of single nucleotide polymorphism (SNP) markers and gene expression markers (GEMs) for the major GSL types are presented in detail, while Manhattan plots and QQ plots for the associations of individual GSLs are also included. Root genetic association are supported by differential expression analysis generated from root RNA-seq. For further interpretation and details, please see the related research article entitled ‘Genetic architecture of glucosinolate variation in Brassica napus’ (Kittipol et al., 2019). Keywords: Glucosinolates, Genetic associations, Associative transcriptomics, SNP markers, Gene expression markers, Population structure, Oilseed rape, Brassica napushttp://www.sciencedirect.com/science/article/pii/S2352340919307577 |
| spellingShingle | Varanya Kittipol Zhesi He Lihong Wang Tim Doheny-Adams Swen Langer Ian Bancroft Data in support of genetic architecture of glucosinolate variations in Brassica napus Data in Brief |
| title | Data in support of genetic architecture of glucosinolate variations in Brassica napus |
| title_full | Data in support of genetic architecture of glucosinolate variations in Brassica napus |
| title_fullStr | Data in support of genetic architecture of glucosinolate variations in Brassica napus |
| title_full_unstemmed | Data in support of genetic architecture of glucosinolate variations in Brassica napus |
| title_short | Data in support of genetic architecture of glucosinolate variations in Brassica napus |
| title_sort | data in support of genetic architecture of glucosinolate variations in brassica napus |
| url | http://www.sciencedirect.com/science/article/pii/S2352340919307577 |
| work_keys_str_mv | AT varanyakittipol datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus AT zhesihe datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus AT lihongwang datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus AT timdohenyadams datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus AT swenlanger datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus AT ianbancroft datainsupportofgeneticarchitectureofglucosinolatevariationsinbrassicanapus |