The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quad...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1704653 |
| _version_ | 1797639534425407488 |
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| author | Shuo Yu Xiaojuan Li Kai Jiang Miaomiao Shi |
| author_facet | Shuo Yu Xiaojuan Li Kai Jiang Miaomiao Shi |
| author_sort | Shuo Yu |
| collection | DOAJ |
| description | The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quadripartite structure including one large single copy (LSC) region (88,857 bp), one small single copy (SSC) region (19,130bp) and a pair of inverted repeats (IR) regions (25,478bp). The GC content of this genome was 35.8%. The whole genome contained 132 genes including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that R. brevipedunculata and R. sinensis formed a distinct clade separated from Potamogeton perfoliatus. |
| first_indexed | 2024-03-11T13:18:07Z |
| format | Article |
| id | doaj.art-f6ae3fb80d4b46f3add9d830fa84c3b1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:07Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f6ae3fb80d4b46f3add9d830fa84c3b12023-11-03T11:00:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015147447510.1080/23802359.2019.17046531704653The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den HartogShuo Yu0Xiaojuan Li1Kai Jiang2Miaomiao Shi3Ministry of Natural Resources, Fourth Institute of OceanographyKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesShanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical GardenKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesThe taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quadripartite structure including one large single copy (LSC) region (88,857 bp), one small single copy (SSC) region (19,130bp) and a pair of inverted repeats (IR) regions (25,478bp). The GC content of this genome was 35.8%. The whole genome contained 132 genes including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that R. brevipedunculata and R. sinensis formed a distinct clade separated from Potamogeton perfoliatus.http://dx.doi.org/10.1080/23802359.2019.1704653ruppia brevipedunculata; illumina sequencingplastid genomephylogenetic relationship |
| spellingShingle | Shuo Yu Xiaojuan Li Kai Jiang Miaomiao Shi The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog Mitochondrial DNA. Part B. Resources ruppia brevipedunculata; illumina sequencing plastid genome phylogenetic relationship |
| title | The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog |
| title_full | The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog |
| title_fullStr | The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog |
| title_full_unstemmed | The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog |
| title_short | The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog |
| title_sort | complete plastid genome of ruppia brevipedunculata shuo yu den hartog |
| topic | ruppia brevipedunculata; illumina sequencing plastid genome phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2019.1704653 |
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