cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians [version 2; peer review: 3 approved]

cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians [version 2; peer review: 3 approved]

Hundreds of different mathematical models have been proposed for describing electrophysiology of various cell types. These models are quite complex (nonlinear systems of typically tens of ODEs and sometimes hundreds of parameters) and software packages such as the Cancer, Heart and Soft Tissue Envir...

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Bibliographic Details
Main Authors: Gary R Mirams, Michael Clerx, Maurice Hendrix, Sarah M Keating, Asif U Tamuri, Jonathan Cooper, Ross H Johnstone
Format: Article
Language:English
Published: Wellcome 2022-06-01
Series:Wellcome Open Research
Subjects:
CellML
cardiac electrophysiology
code generation
C++
jacobian
singularity
eng
Online Access:https://wellcomeopenresearch.org/articles/6-261/v2

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