Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China
The maize anthracnose stalk rot and leaf blight diseases caused by the fungal pathogen Colletotrichum graminicola is emerging as an important threat to corn production worldwide. In this work, we provide an improved genome assembly of a C. graminicola strain (TZ-3) by using the PacBio Sequel II and...
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2023-07-01
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| Series: | Molecular Plant-Microbe Interactions |
| Subjects: | |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0210-A |
| _version_ | 1797741097699508224 |
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| author | Xuetao Shi Xinyao Xia Jie Mei Ziwen Gong Junqi Zhang Yutao Xiao Canxing Duan Wende Liu |
| author_facet | Xuetao Shi Xinyao Xia Jie Mei Ziwen Gong Junqi Zhang Yutao Xiao Canxing Duan Wende Liu |
| author_sort | Xuetao Shi |
| collection | DOAJ |
| description | The maize anthracnose stalk rot and leaf blight diseases caused by the fungal pathogen Colletotrichum graminicola is emerging as an important threat to corn production worldwide. In this work, we provide an improved genome assembly of a C. graminicola strain (TZ-3) by using the PacBio Sequel II and Illumina high-throughput sequencing technologies. The genome of TZ-3 consists of 36 contigs with a length of 59.3 Mb. After correction and evaluation with the Illumina sequencing data and BUSCO, this genome showed a high assembly quality and integrity. Gene annotation of this genome predicted 11,911 protein-coding genes, among which 983 secreted protein-coding genes and 332 effector genes were predicted. Compared with previous genomes of C. graminicola strains, TZ-3 genome is superior in nearly all parameters. The genome assembly and annotation will enhance our knowledge of the genetic makeup of the pathogen and molecular mechanisms underlying its pathogenicity and will provide valuable insights into genome variation across different regions. [Graphic: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
| first_indexed | 2024-03-12T14:21:58Z |
| format | Article |
| id | doaj.art-f8e251636c0349bbb3271e197e104cec |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-03-12T14:21:58Z |
| publishDate | 2023-07-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-f8e251636c0349bbb3271e197e104cec2023-08-19T01:52:12ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062023-07-0136744745110.1094/MPMI-10-22-0210-AGenome Sequence Resource of a Colletotrichum graminicola Field Strain from ChinaXuetao Shi0Xinyao Xia1Jie Mei2Ziwen Gong3Junqi Zhang4Yutao Xiao5Canxing Duan6Wende Liu7Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, ChinaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, ChinaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, ChinaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, ChinaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, ChinaShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, ChinaInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, ChinaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, ChinaThe maize anthracnose stalk rot and leaf blight diseases caused by the fungal pathogen Colletotrichum graminicola is emerging as an important threat to corn production worldwide. In this work, we provide an improved genome assembly of a C. graminicola strain (TZ-3) by using the PacBio Sequel II and Illumina high-throughput sequencing technologies. The genome of TZ-3 consists of 36 contigs with a length of 59.3 Mb. After correction and evaluation with the Illumina sequencing data and BUSCO, this genome showed a high assembly quality and integrity. Gene annotation of this genome predicted 11,911 protein-coding genes, among which 983 secreted protein-coding genes and 332 effector genes were predicted. Compared with previous genomes of C. graminicola strains, TZ-3 genome is superior in nearly all parameters. The genome assembly and annotation will enhance our knowledge of the genetic makeup of the pathogen and molecular mechanisms underlying its pathogenicity and will provide valuable insights into genome variation across different regions. [Graphic: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0210-Aanthracnose stalk rot and leaf blightColletotrichum graminicolastrain TZ-3 |
| spellingShingle | Xuetao Shi Xinyao Xia Jie Mei Ziwen Gong Junqi Zhang Yutao Xiao Canxing Duan Wende Liu Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China Molecular Plant-Microbe Interactions anthracnose stalk rot and leaf blight Colletotrichum graminicola strain TZ-3 |
| title | Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China |
| title_full | Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China |
| title_fullStr | Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China |
| title_full_unstemmed | Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China |
| title_short | Genome Sequence Resource of a Colletotrichum graminicola Field Strain from China |
| title_sort | genome sequence resource of a colletotrichum graminicola field strain from china |
| topic | anthracnose stalk rot and leaf blight Colletotrichum graminicola strain TZ-3 |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0210-A |
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