Development of Microsatellite Markers for a Dioecious (Cucurbitaceae)

Understanding the evolution of flower diversity is a central topic in plant evolutionary ecology, and natural selection on floral traits via male fitness could be estimated quantitatively using microsatellites. Here, based on RNA sequencing, we developed simple sequence repeat primers and verified p...

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Bibliographic Details
Main Authors: Zhu-Qing Chen, Zhi-Li Zhou, Lin-Lin Wang, Li-Hua Meng, Yuan-Wen Duan
Format: Article
Language:English
Published: SAGE Publishing 2020-02-01
Series:Evolutionary Bioinformatics
Online Access:https://doi.org/10.1177/1176934320908261
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Summary:Understanding the evolution of flower diversity is a central topic in plant evolutionary ecology, and natural selection on floral traits via male fitness could be estimated quantitatively using microsatellites. Here, based on RNA sequencing, we developed simple sequence repeat primers and verified polymorphisms in 2 wild populations of Herpetospermum pedunculosum (Cucurbitaceae), a dioecious annual plants native to the Himalaya Mountains. A total of 131 paired primers were designed; 15 paired primers were found to be polymorphic, with the expected heterozygosity varying between 0.280 and 0.767. We also identified 58 genotypes in 20 plants from the 2 populations. Conclusively, these primers could be effective in examining male fitness and population genetic structure of H pedunculosum in future studies.
ISSN:1176-9343