Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients
Soil ammonia oxidizing bacteria (AOB) and archaea (AOA) are responsible for nitrification in terrestrial ecosystems, and play important roles in ecosystem functioning by modulating the rates of N losses to ground water and the atmosphere. Vascular plants have been shown to modulate the abundance of...
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2016-04-01
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| Series: | Frontiers in Microbiology |
| Subjects: | |
| Online Access: | http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.00505/full |
| _version_ | 1818322219681447936 |
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| author | Manuel eDelgado-Baquerizo Fernando Tomás Maestre David J. Eldridge Brajesh K Singh Brajesh K Singh |
| author_facet | Manuel eDelgado-Baquerizo Fernando Tomás Maestre David J. Eldridge Brajesh K Singh Brajesh K Singh |
| author_sort | Manuel eDelgado-Baquerizo |
| collection | DOAJ |
| description | Soil ammonia oxidizing bacteria (AOB) and archaea (AOA) are responsible for nitrification in terrestrial ecosystems, and play important roles in ecosystem functioning by modulating the rates of N losses to ground water and the atmosphere. Vascular plants have been shown to modulate the abundance of AOA and AOB in drylands, the largest biome on Earth. Like plants, biotic and abiotic features such as insect nests and biological soil crusts (biocrusts) have unique biogeochemical attributes (e.g. nutrient availability) that may modify the local abundance of AOA and AOB. However, little is known about how these biotic and abiotic features and their interactions modulate the abundance of AOA and AOB in drylands. Here, we evaluate the abundance of amoA genes from AOB and AOA within six microsites commonly found in drylands (open areas, biocrusts, ant nests, grasses, nitrogen-fixing shrubs and trees) at 21 sites from eastern Australia, including arid and mesic ecosystems that are threatened by predicted increases in aridity. Our results from Structural Equation Modeling (SEM) suggest that soil microsite differentiation alters the abundance of AOB (but not AOA) in both arid and mesic ecosystems. While the abundance of AOA sharply increased with increasing aridity in all microsites, the response of AOB abundance was microsite-dependent, with increases (nitrogen-fixing shrubs, ant nests), decreases (open areas) or no changes (grasses, biocrusts, trees) in abundance with increasing aridity. Microsites supporting the highest abundance of AOB were trees, nitrogen-fixing shrubs and ant nests. These results are linked to particular soil characteristics (e.g. total carbon and ammonium) under these microsites. Our findings advance our understanding of key drivers of functionally important microbial communities and N availability in highly heterogeneous ecosystems such as drylands, which may be obscured when different soil microsites are not explicitly considered. |
| first_indexed | 2024-12-13T10:53:19Z |
| format | Article |
| id | doaj.art-f96345ec21d348c5a74302145c697432 |
| institution | Directory Open Access Journal |
| issn | 1664-302X |
| language | English |
| last_indexed | 2024-12-13T10:53:19Z |
| publishDate | 2016-04-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Microbiology |
| spelling | doaj.art-f96345ec21d348c5a74302145c6974322022-12-21T23:49:45ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2016-04-01710.3389/fmicb.2016.00505153397Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradientsManuel eDelgado-Baquerizo0Fernando Tomás Maestre1David J. Eldridge2Brajesh K Singh3Brajesh K Singh4University of Western SydneyUniversidad Rey Juan CarlosUniversity of New South WalesUniversity of Western SydneyUniversity of Western SydneySoil ammonia oxidizing bacteria (AOB) and archaea (AOA) are responsible for nitrification in terrestrial ecosystems, and play important roles in ecosystem functioning by modulating the rates of N losses to ground water and the atmosphere. Vascular plants have been shown to modulate the abundance of AOA and AOB in drylands, the largest biome on Earth. Like plants, biotic and abiotic features such as insect nests and biological soil crusts (biocrusts) have unique biogeochemical attributes (e.g. nutrient availability) that may modify the local abundance of AOA and AOB. However, little is known about how these biotic and abiotic features and their interactions modulate the abundance of AOA and AOB in drylands. Here, we evaluate the abundance of amoA genes from AOB and AOA within six microsites commonly found in drylands (open areas, biocrusts, ant nests, grasses, nitrogen-fixing shrubs and trees) at 21 sites from eastern Australia, including arid and mesic ecosystems that are threatened by predicted increases in aridity. Our results from Structural Equation Modeling (SEM) suggest that soil microsite differentiation alters the abundance of AOB (but not AOA) in both arid and mesic ecosystems. While the abundance of AOA sharply increased with increasing aridity in all microsites, the response of AOB abundance was microsite-dependent, with increases (nitrogen-fixing shrubs, ant nests), decreases (open areas) or no changes (grasses, biocrusts, trees) in abundance with increasing aridity. Microsites supporting the highest abundance of AOB were trees, nitrogen-fixing shrubs and ant nests. These results are linked to particular soil characteristics (e.g. total carbon and ammonium) under these microsites. Our findings advance our understanding of key drivers of functionally important microbial communities and N availability in highly heterogeneous ecosystems such as drylands, which may be obscured when different soil microsites are not explicitly considered.http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.00505/fullNitrificationNitrogen CyclenitrifiersdrylandsBiocrusts |
| spellingShingle | Manuel eDelgado-Baquerizo Fernando Tomás Maestre David J. Eldridge Brajesh K Singh Brajesh K Singh Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients Frontiers in Microbiology Nitrification Nitrogen Cycle nitrifiers drylands Biocrusts |
| title | Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| title_full | Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| title_fullStr | Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| title_full_unstemmed | Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| title_short | Microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| title_sort | microsite differentiation drives the abundance of soil ammonia oxidizing bacteria along aridity gradients |
| topic | Nitrification Nitrogen Cycle nitrifiers drylands Biocrusts |
| url | http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.00505/full |
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