Predicting protein and pathway associations for understudied dark kinases using pattern-constrained knowledge graph embedding

The 534 protein kinases encoded in the human genome constitute a large druggable class of proteins that include both well-studied and understudied “dark” members. Accurate prediction of dark kinase functions is a major bioinformatics challenge. Here, we employ a graph mining approach that uses the e...

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Bibliographic Details
Main Authors: Mariah V. Salcedo, Nathan Gravel, Abbas Keshavarzi, Liang-Chin Huang, Krzysztof J. Kochut, Natarajan Kannan
Format: Article
Language:English
Published: PeerJ Inc. 2023-10-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/15815.pdf