Whole Exome/Genome Sequencing Joint Analysis of a Family with Oligogenic Familial Hypercholesterolemia

Autosomal Dominant Hypercholesterolemia (ADH) is a genetic disorder caused by pathogenic variants in <i>LDLR</i>, <i>APOB</i>, <i>PCSK9</i> and <i>APOE</i> genes. We sought to identify new candidate genes responsible for the ADH phenotype in patients w...

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Main Authors: Youmna Ghaleb, Sandy Elbitar, Anne Philippi, Petra El Khoury, Yara Azar, Miangaly Andrianirina, Alexia Loste, Yara Abou-Khalil, Gaël Nicolas, Marie Le Borgne, Philippe Moulin, Mathilde Di-Filippo, Sybil Charrière, Michel Farnier, Cécile Yelnick, Valérie Carreau, Jean Ferrières, Jean-Michel Lecerf, Alexa Derksen, Geneviève Bernard, Marie-Soleil Gauthier, Benoit Coulombe, Dieter Lütjohann, Bertrand Fin, Anne Boland, Robert Olaso, Jean-François Deleuze, Jean-Pierre Rabès, Catherine Boileau, Marianne Abifadel, Mathilde Varret
Format: Article
Language:English
Published: MDPI AG 2022-03-01
Series:Metabolites
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Online Access:https://www.mdpi.com/2218-1989/12/3/262
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Summary:Autosomal Dominant Hypercholesterolemia (ADH) is a genetic disorder caused by pathogenic variants in <i>LDLR</i>, <i>APOB</i>, <i>PCSK9</i> and <i>APOE</i> genes. We sought to identify new candidate genes responsible for the ADH phenotype in patients without pathogenic variants in the known ADH-causing genes by focusing on a French family with affected and non-affected members who presented a high ADH polygenic risk score (wPRS). Linkage analysis, whole exome and whole genome sequencing resulted in the identification of variants p.(Pro398Ala) in <i>CYP7A1</i>, p.(Val1382Phe) in <i>LRP6</i> and p.(Ser202His) in <i>LDLRAP1</i>. A total of 6 other variants were identified in 6 of 160 unrelated ADH probands: p.(Ala13Val) and p.(Aps347Asn) in <i>CYP7A1</i>; p.(Tyr972Cys), p.(Thr1479Ile) and p.(Ser1612Phe) in <i>LRP6</i>; and p.(Ser202LeufsTer19) in <i>LDLRAP1</i>. All six probands presented a moderate wPRS. Serum analyses of carriers of the p.(Pro398Ala) variant in <i>CYP7A1</i> showed no differences in the synthesis of bile acids compared to the serums of non-carriers. Functional studies of the four <i>LRP6</i> mutants in HEK293T cells resulted in contradictory results excluding a major effect of each variant alone. Within the family, none of the heterozygous for only the <i>LDLRAP1</i> p.(Ser202His) variant presented ADH. Altogether, each variant individually does not result in elevated LDL-C; however, the oligogenic combination of two or three variants reveals the ADH phenotype.
ISSN:2218-1989