Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder

Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder

The interaction of miRNA and lncRNA is known to be important for gene regulations. However, the number of known lncRNA-miRNA interactions is still very limited and there are limited computational tools available for predicting new ones. Considering that lncRNAs and miRNAs share internal patterns in...

Full description

Bibliographic Details
Main Authors:	Yu-An Huang, Zhi-An Huang, Zhu-Hong You, Zexuan Zhu, Wen-Zhun Huang, Jian-Xin Guo, Chang-Qing Yu
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2019-08-01
Series:	Frontiers in Genetics
Subjects:	LncRNA–miRNA interactions graph convolution network computational prediction model regulation network system biology model
Online Access:	https://www.frontiersin.org/article/10.3389/fgene.2019.00758/full

Similar Items

Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph
by: Zhi-An Huang, et al.
Published: (2018-12-01)

Discovering the ‘Dark matters’ in expression data of miRNA based on the miRNA-mRNA and miRNA-lncRNA networks
by: Cong Pian, et al.
Published: (2018-10-01)

LncRNA–miRNA–mRNA ceRNA network of different body colors in Plectropomus leopardus
by: Ruijuan Hao, et al.
Published: (2023-05-01)

Predicting lncRNA–Protein Interactions With miRNAs as Mediators in a Heterogeneous Network Model
by: Yuan-Ke Zhou, et al.
Published: (2020-01-01)

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in human aortic dissection
by: Hao Zhang, et al.
Published: (2021-10-01)

Progress of circRNA/lncRNA-miRNA-mRNA axis in atrial fibrillation
by: Jia-le Wen, et al.
Published: (2023-12-01)

LncRNA/miRNA/mRNA Network Introduces Novel Biomarkers in Prostate Cancer
by: Mohammad Taheri, et al.
Published: (2022-11-01)

IMDAILM: Inferring miRNA-Disease Association by Integrating lncRNA and miRNA Data
by: Yuhua Yao, et al.
Published: (2020-01-01)

GNMFLMI: Graph Regularized Nonnegative Matrix Factorization for Predicting LncRNA-MiRNA Interactions
by: Mei-Neng Wang, et al.
Published: (2020-01-01)

Current insights into the molecular systems pharmacology of lncRNA-miRNA regulatory interactions and implications in cancer translational medicine
by: Sujit Nair
Published: (2016-04-01)

LncRNA-miRNA-mRNA regulatory networks in skin aging and therapeutic potentials
by: Sungchul Kim
Published: (2023-10-01)

Evaluation of the lncRNA-miRNA-mRNA ceRNA network in lungs of miR-147 −/− mice
by: Nan Zhang, et al.
Published: (2024-03-01)

Profiling the Spatial Expression Pattern and ceRNA Network of lncRNA, miRNA, and mRNA Associated with the Development of Intermuscular Bones in Zebrafish
by: Weidong Ye, et al.
Published: (2022-12-01)

LncRNA-miRNA-mRNA expression variation profile in the urine of calcium oxalate stone patients
by: Xiongfa Liang, et al.
Published: (2019-04-01)

Mechanisms of circRNA/lncRNA-miRNA interactions and applications in disease and drug research
by: Benchi Ma, et al.
Published: (2023-06-01)

The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development
by: Zhiwei Zhu, et al.
Published: (2020-02-01)

Construction and Comprehensive Analysis of a Molecular Association Network via lncRNA–miRNA–Disease–Drug–Protein Graph
by: Zhen-Hao Guo, et al.
Published: (2019-08-01)

Regulator Non-coding RNAs: miRNA, siRNA, piRNA, lncRNA, circRNA
by: Ertan Altayli
Published: (2020-11-01)

Integrated analysis of the expression profiles of the lncRNA-miRNA-mRNA ceRNA network in granulosa and cumulus cells from yak ovaries
by: Ling Zhao, et al.
Published: (2022-09-01)

Integrated Analysis Reveals a lncRNA–miRNA–mRNA Network Associated with Pigeon Skeletal Muscle Development
by: Tao Zhang, et al.
Published: (2021-11-01)

The potential regulatory role of the lncRNA-miRNA-mRNA axis in teleost fish
by: Zhixia Zhou, et al.
Published: (2023-02-01)

miRNA, lncRNA and circRNA: Targeted Molecules Full of Therapeutic Prospects in the Development of Diabetic Retinopathy
by: Xingyu Chang, et al.
Published: (2021-11-01)

Characterization of the lncRNA-miRNA-mRNA regulatory network to reveal potential functional competing endogenous RNAs in traumatic brain injury
by: Jiangtao Yu, et al.
Published: (2023-01-01)

Identification of a lncRNA AC011511.5- Mediated Competitive Endogenous RNA Network Involved in the Pathogenesis of Allergic Rhinitis
by: Yujuan Yang, et al.
Published: (2022-05-01)

Unveiling Mesenchymal Stem Cells’ Regenerative Potential in Clinical Applications: Insights in miRNA and lncRNA Implications
by: Maurycy Jankowski, et al.
Published: (2023-10-01)

Identification of Potential Blind-Side Hypermelanosis-Related lncRNA–miRNA–mRNA Regulatory Network in a Flatfish Species, Chinese Tongue Sole (Cynoglossus semilaevis)
by: Yangzhen Li, et al.
Published: (2022-02-01)

Identification of the lncRNA–miRNA‒mRNA regulatory network for middle cerebral artery occlusion-induced ischemic stroke
by: Guixin Shi, et al.
Published: (2023-05-01)

LncMirNet: Predicting LncRNA–miRNA Interaction Based on Deep Learning of Ribonucleic Acid Sequences
by: Sen Yang, et al.
Published: (2020-09-01)

Plasma exosomes lncRNA-miRNA-mRNA network construction and its diagnostic efficacy identification in first-episode schizophrenia
by: Xinzhe Du, et al.
Published: (2023-08-01)

Reconstruction and Analysis of the lncRNA-miRNA-mRNA Network Based on Competitive Endogenous RNA Reveal Functional lncRNAs in Dilated Cardiomyopathy
by: Lichan Tao, et al.
Published: (2019-11-01)

A novel lncRNA-miRNA-mRNA triple network identifies lncRNA TWF1 as an important regulator of miRNA and gene expression in coronary artery disease
by: Liu Miao, et al.
Published: (2019-06-01)

Competitive endogenous network of circRNA, lncRNA, and miRNA in osteosarcoma chemoresistance
by: Shuang Qin, et al.
Published: (2023-09-01)

Integrated analysis of lncRNA/circRNA–miRNA–mRNA in the proliferative phase of liver regeneration in mice with liver fibrosis
by: Qian Wang, et al.
Published: (2023-07-01)

Identification of lncRNA–miRNA–mRNA regulatory network associated with primary open angle glaucoma
by: Minwen Zhou, et al.
Published: (2020-03-01)

Construction of a potentially functional lncRNA-miRNA-mRNA network in sepsis by bioinformatics analysis
by: Li-ming Zheng, et al.
Published: (2022-11-01)

A Competitive Endogenous RNA Network Based on Differentially Expressed lncRNA in Lipopolysaccharide‐Induced Acute Lung Injury in Mice
by: Xianxian Jia, et al.
Published: (2021-11-01)

Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA–mRNA–miRNA ceRNA network analysis
by: Weiwei Liang, et al.
Published: (2019-09-01)

MiRNA and LncRNA as Potential Biomarkers in Triple-Negative Breast Cancer: A Review
by: Simona Ruxandra Volovat, et al.
Published: (2020-11-01)

Characterization of lncRNA/circRNA-miRNA-mRNA network to reveal potential functional ceRNAs in the skeletal muscle of chicken
by: Zegun Pan, et al.
Published: (2022-09-01)

ceRNA Network of lncRNA/miRNA as Circulating Prognostic Biomarkers in Non-Hodgkin Lymphomas: Bioinformatic Analysis and Assessment of Their Prognostic Value in an NHL Cohort
by: Mara Fernandes, et al.
Published: (2021-12-01)