Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China
Chloroplast (cp) genome sequences have been become a useful tool for phylogenetic and evolutionary studies in the herb. In this study, the complete cp genome of Bletilla striata was assembled. The complete cp genome is circular of 157,016 base pairs (bp) in length, which harbours a large single-copy...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1676177 |
| _version_ | 1797639616600211456 |
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| author | Hui Feng Tianyi Cao Hong Xu Yihui Liu Ying Han Wei Sun Yi Liu |
| author_facet | Hui Feng Tianyi Cao Hong Xu Yihui Liu Ying Han Wei Sun Yi Liu |
| author_sort | Hui Feng |
| collection | DOAJ |
| description | Chloroplast (cp) genome sequences have been become a useful tool for phylogenetic and evolutionary studies in the herb. In this study, the complete cp genome of Bletilla striata was assembled. The complete cp genome is circular of 157,016 base pairs (bp) in length, which harbours a large single-copy region (85,821 bp), a small single-copy region (17,743 bp), and two inverted-repeat regions (each one of 26,726 bp). The cp genome of B. striata contains 139 genes, including 94 protein-coding genes (PCGs), 37 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). The overall nucleotide content of the cp genome is A of 31.0%, T of 31.8%, C of 18.9%, and G of 18.3%, with a total AT content of 62.8% and GC content of 37.2%. However, the phylogenetic relationship analysis using maximum-likelihood (ML) method, which the result showed that the position of B. striata was situated as Bletilla ochracea in Orchidaceae. This study will be helpful for studies on the cp genetic engineering and medicinal herb value of Orchidaceae species in further. |
| first_indexed | 2024-03-11T13:20:07Z |
| format | Article |
| id | doaj.art-f9f8308782cc4f7dbfa6b81f85de041c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:20:07Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-f9f8308782cc4f7dbfa6b81f85de041c2023-11-03T10:38:49ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423542354310.1080/23802359.2019.16761771676177Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in ChinaHui Feng0Tianyi Cao1Hong Xu2Yihui Liu3Ying Han4Wei Sun5Yi Liu6Hangzhou Red Cross HospitalZhejiang Chinese Medical UniversityHangzhou Red Cross HospitalHangzhou Red Cross HospitalHangzhou Red Cross HospitalHangzhou Red Cross HospitalPsychosomatic Department of Hangzhou Seventh People’s HospitalChloroplast (cp) genome sequences have been become a useful tool for phylogenetic and evolutionary studies in the herb. In this study, the complete cp genome of Bletilla striata was assembled. The complete cp genome is circular of 157,016 base pairs (bp) in length, which harbours a large single-copy region (85,821 bp), a small single-copy region (17,743 bp), and two inverted-repeat regions (each one of 26,726 bp). The cp genome of B. striata contains 139 genes, including 94 protein-coding genes (PCGs), 37 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). The overall nucleotide content of the cp genome is A of 31.0%, T of 31.8%, C of 18.9%, and G of 18.3%, with a total AT content of 62.8% and GC content of 37.2%. However, the phylogenetic relationship analysis using maximum-likelihood (ML) method, which the result showed that the position of B. striata was situated as Bletilla ochracea in Orchidaceae. This study will be helpful for studies on the cp genetic engineering and medicinal herb value of Orchidaceae species in further.http://dx.doi.org/10.1080/23802359.2019.1676177bletilla striataorchidaceaeherbchloroplast genomephylogenetic and evolutionary |
| spellingShingle | Hui Feng Tianyi Cao Hong Xu Yihui Liu Ying Han Wei Sun Yi Liu Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China Mitochondrial DNA. Part B. Resources bletilla striata orchidaceae herb chloroplast genome phylogenetic and evolutionary |
| title | Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China |
| title_full | Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China |
| title_fullStr | Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China |
| title_short | Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China |
| title_sort | characterization of the complete chloroplast genome of bletilla striata orchidaceae bletilla the herb in china |
| topic | bletilla striata orchidaceae herb chloroplast genome phylogenetic and evolutionary |
| url | http://dx.doi.org/10.1080/23802359.2019.1676177 |
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