PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration
<i>Paris polyphylla</i> Smith is a perennial medicinal herb with records from around 2000 years ago. Polyphyllins are the main bioactive compounds of this herb, which are found to have remarkable effects on bacteriostatic, antiphlogistic, sedative, and antitumor. However, the market dema...
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MDPI AG
2022-12-01
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| Online Access: | https://www.mdpi.com/1424-2818/14/12/1057 |
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| author | Qixuan Su Xuan Zhang Jing Li Wenjing Yang Qiang Ren Xiaoyang Gao Changning Liu |
| author_facet | Qixuan Su Xuan Zhang Jing Li Wenjing Yang Qiang Ren Xiaoyang Gao Changning Liu |
| author_sort | Qixuan Su |
| collection | DOAJ |
| description | <i>Paris polyphylla</i> Smith is a perennial medicinal herb with records from around 2000 years ago. Polyphyllins are the main bioactive compounds of this herb, which are found to have remarkable effects on bacteriostatic, antiphlogistic, sedative, and antitumor. However, the market demand for <i>P. polyphylla</i> is sharply increasing, and the wild resources are threatened by plundering exploitation. Integrating molecular data of <i>P. polyphylla</i> can benefit the sustainable resource exploitation. Here, we constructed PPDP (<i>Paris polyphylla</i> Data Portal) to provide a data platform for polyphyllin biosynthesis and germplasm resource research. PPDP integrates related molecular data resources, functional genomics analysis, and morphological identification. The database provides abundant data (transcriptome, CDS, lncRNA, alternative splicing, gene family, SSR, and chloroplast genome) and practical analytical tools (network construction, heatmap of expression profiles, enrichment, and pathway search) with a user-friendly interface. So far, PPDP is the first biomolecular database for the genus <i>Paris</i> plants. In the future, we will gradually add genomic data and other necessary molecular biological information to improve the database. |
| first_indexed | 2024-03-09T17:07:57Z |
| format | Article |
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| issn | 1424-2818 |
| language | English |
| last_indexed | 2024-03-09T17:07:57Z |
| publishDate | 2022-12-01 |
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| spelling | doaj.art-fa006dff6b774af6b8cbe62fd09b96982023-11-24T14:22:50ZengMDPI AGDiversity1424-28182022-12-011412105710.3390/d14121057PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource ExplorationQixuan Su0Xuan Zhang1Jing Li2Wenjing Yang3Qiang Ren4Xiaoyang Gao5Changning Liu6School of Life Sciences, University of Science and Technology of China, Hefei 230026, ChinaCenter for Molecular Diagnosis and Precision Medicine, The Department of Clinical Laboratory, The First Affiliated Hospital of Nanchang University, Nanchang 330006, ChinaCAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming 650223, ChinaCAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming 650223, ChinaCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, ChinaCAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming 650223, ChinaSchool of Life Sciences, University of Science and Technology of China, Hefei 230026, China<i>Paris polyphylla</i> Smith is a perennial medicinal herb with records from around 2000 years ago. Polyphyllins are the main bioactive compounds of this herb, which are found to have remarkable effects on bacteriostatic, antiphlogistic, sedative, and antitumor. However, the market demand for <i>P. polyphylla</i> is sharply increasing, and the wild resources are threatened by plundering exploitation. Integrating molecular data of <i>P. polyphylla</i> can benefit the sustainable resource exploitation. Here, we constructed PPDP (<i>Paris polyphylla</i> Data Portal) to provide a data platform for polyphyllin biosynthesis and germplasm resource research. PPDP integrates related molecular data resources, functional genomics analysis, and morphological identification. The database provides abundant data (transcriptome, CDS, lncRNA, alternative splicing, gene family, SSR, and chloroplast genome) and practical analytical tools (network construction, heatmap of expression profiles, enrichment, and pathway search) with a user-friendly interface. So far, PPDP is the first biomolecular database for the genus <i>Paris</i> plants. In the future, we will gradually add genomic data and other necessary molecular biological information to improve the database.https://www.mdpi.com/1424-2818/14/12/1057<i>Paris polyphylla</i>polyphyllingermplasm resourcedatabase |
| spellingShingle | Qixuan Su Xuan Zhang Jing Li Wenjing Yang Qiang Ren Xiaoyang Gao Changning Liu PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration Diversity <i>Paris polyphylla</i> polyphyllin germplasm resource database |
| title | PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration |
| title_full | PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration |
| title_fullStr | PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration |
| title_full_unstemmed | PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration |
| title_short | PPDP: A Data Portal of <i>Paris polyphylla</i> for Polyphyllin Biosynthesis and Germplasm Resource Exploration |
| title_sort | ppdp a data portal of i paris polyphylla i for polyphyllin biosynthesis and germplasm resource exploration |
| topic | <i>Paris polyphylla</i> polyphyllin germplasm resource database |
| url | https://www.mdpi.com/1424-2818/14/12/1057 |
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