The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development

IntroductionZinc finger protein 3 (ZFP3) and closely related C2H2 zinc finger proteins have been identified as regulators of abscisic acid signals and photomorphogenic responses during germination. Whether ZFP3 and related ZFP factors regulate plant development is, however, not known.ResultsZFP3 ove...

Full description

Bibliographic Details
Main Authors: Dániel Benyó, Emese Bató, Dóra Faragó, Gábor Rigó, Ildikó Domonkos, Nitin Labhane, Laura Zsigmond, Melvin Prasad, István Nagy, László Szabados
Format: Article
Language:English
Published: Frontiers Media S.A. 2024-01-01
Series:Frontiers in Plant Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fpls.2023.1221519/full
_version_ 1827390362883194880
author Dániel Benyó
Emese Bató
Dóra Faragó
Gábor Rigó
Ildikó Domonkos
Nitin Labhane
Laura Zsigmond
Melvin Prasad
István Nagy
István Nagy
László Szabados
author_facet Dániel Benyó
Emese Bató
Dóra Faragó
Gábor Rigó
Ildikó Domonkos
Nitin Labhane
Laura Zsigmond
Melvin Prasad
István Nagy
István Nagy
László Szabados
author_sort Dániel Benyó
collection DOAJ
description IntroductionZinc finger protein 3 (ZFP3) and closely related C2H2 zinc finger proteins have been identified as regulators of abscisic acid signals and photomorphogenic responses during germination. Whether ZFP3 and related ZFP factors regulate plant development is, however, not known.ResultsZFP3 overexpression reduced plant growth, limited cell expansion in leaves, and compromised root hair development. The T-DNA insertion zfp3 mutant and transgenic lines with silenced ZFP1, ZFP3, ZFP4, and ZFP7 genes were similar to wild-type plants or had only minor differences in plant growth and morphology, probably due to functional redundancy. RNAseq transcript profiling identified ZFP3-controlled gene sets, including targets of ABA signaling with reduced transcript abundance. The largest gene set that was downregulated by ZFP3 encoded regulatory and structural proteins in cell wall biogenesis, cell differentiation, and root hair formation. Chromatin immunoprecipitation confirmed ZFP3 binding to several target promoters.DiscussionOur results suggest that ZFP3 and related ZnF proteins can modulate cellular differentiation and plant vegetative development by regulating the expression of genes implicated in cell wall biogenesis.
first_indexed 2024-03-08T16:51:34Z
format Article
id doaj.art-fa68932f2a884833b4b418a5b5d68057
institution Directory Open Access Journal
issn 1664-462X
language English
last_indexed 2024-03-08T16:51:34Z
publishDate 2024-01-01
publisher Frontiers Media S.A.
record_format Article
series Frontiers in Plant Science
spelling doaj.art-fa68932f2a884833b4b418a5b5d680572024-01-05T04:30:54ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2024-01-011410.3389/fpls.2023.12215191221519The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair developmentDániel Benyó0Emese Bató1Dóra Faragó2Gábor Rigó3Ildikó Domonkos4Nitin Labhane5Laura Zsigmond6Melvin Prasad7István Nagy8István Nagy9László Szabados10Instiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryDepartment of Botany, Bhavan’s College, Mumbai, Maharashtra, IndiaInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryInstitute of Biochemistry, HUN-REN Biological Research Centre, Szeged, HungarySeqOmics Biotechnology Ltd, Mórahalom, HungaryInstiute of Plant Biology, HUN-REN Biological Research Centre, Szeged, HungaryIntroductionZinc finger protein 3 (ZFP3) and closely related C2H2 zinc finger proteins have been identified as regulators of abscisic acid signals and photomorphogenic responses during germination. Whether ZFP3 and related ZFP factors regulate plant development is, however, not known.ResultsZFP3 overexpression reduced plant growth, limited cell expansion in leaves, and compromised root hair development. The T-DNA insertion zfp3 mutant and transgenic lines with silenced ZFP1, ZFP3, ZFP4, and ZFP7 genes were similar to wild-type plants or had only minor differences in plant growth and morphology, probably due to functional redundancy. RNAseq transcript profiling identified ZFP3-controlled gene sets, including targets of ABA signaling with reduced transcript abundance. The largest gene set that was downregulated by ZFP3 encoded regulatory and structural proteins in cell wall biogenesis, cell differentiation, and root hair formation. Chromatin immunoprecipitation confirmed ZFP3 binding to several target promoters.DiscussionOur results suggest that ZFP3 and related ZnF proteins can modulate cellular differentiation and plant vegetative development by regulating the expression of genes implicated in cell wall biogenesis.https://www.frontiersin.org/articles/10.3389/fpls.2023.1221519/fullArabidopsis thalianazinc finger protein 3gene overexpressiongene silencingplant developmentroot hair
spellingShingle Dániel Benyó
Emese Bató
Dóra Faragó
Gábor Rigó
Ildikó Domonkos
Nitin Labhane
Laura Zsigmond
Melvin Prasad
István Nagy
István Nagy
László Szabados
The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
Frontiers in Plant Science
Arabidopsis thaliana
zinc finger protein 3
gene overexpression
gene silencing
plant development
root hair
title The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
title_full The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
title_fullStr The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
title_full_unstemmed The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
title_short The zinc finger protein 3 of Arabidopsis thaliana regulates vegetative growth and root hair development
title_sort zinc finger protein 3 of arabidopsis thaliana regulates vegetative growth and root hair development
topic Arabidopsis thaliana
zinc finger protein 3
gene overexpression
gene silencing
plant development
root hair
url https://www.frontiersin.org/articles/10.3389/fpls.2023.1221519/full
work_keys_str_mv AT danielbenyo thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT emesebato thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT dorafarago thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT gaborrigo thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT ildikodomonkos thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT nitinlabhane thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT laurazsigmond thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT melvinprasad thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT istvannagy thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT istvannagy thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT laszloszabados thezincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT danielbenyo zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT emesebato zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT dorafarago zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT gaborrigo zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT ildikodomonkos zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT nitinlabhane zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT laurazsigmond zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT melvinprasad zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT istvannagy zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT istvannagy zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment
AT laszloszabados zincfingerprotein3ofarabidopsisthalianaregulatesvegetativegrowthandroothairdevelopment