The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant
Rotheca myricoides (Hochst.) Steane & Mabb. is a plant species used in traditional medicine for the management of diabetes in the lower eastern part of Kenya (Kitui, Machakos and Makueni Counties, Kenya) that is mainly inhabited by the Kamba community. The complete chloroplast genome sequence of...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-09-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1966340 |
| _version_ | 1797638756498407424 |
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| author | Xiaoai Fang Siyi Zhang |
| author_facet | Xiaoai Fang Siyi Zhang |
| author_sort | Xiaoai Fang |
| collection | DOAJ |
| description | Rotheca myricoides (Hochst.) Steane & Mabb. is a plant species used in traditional medicine for the management of diabetes in the lower eastern part of Kenya (Kitui, Machakos and Makueni Counties, Kenya) that is mainly inhabited by the Kamba community. The complete chloroplast genome sequence of R. myricoides was assembled from the whole genome Illumina sequencing data. The genome was 150,596 bp in length, contained an SSC region of 17,237 bp and LSC region of 83,489 bp, separated by IRs of 24,935 bp, each. The genome contained 114 unique genes, including 80 PCGs, 4 rRNA genes, and 30 tRNA genes. In addition, 18 genes contained one or two introns, including 10 PCG genes with a single intron, 2 PCG genes harboring two introns, and 6 tRNA genes harboring a single intron. Phylogenetic analysis supported R. myricoides had the closest genetic relationship with Rotheca serrata and clustered with the Rotheca family species. |
| first_indexed | 2024-03-11T13:08:03Z |
| format | Article |
| id | doaj.art-fa991c8fa53343378639c93f812af781 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:03Z |
| publishDate | 2021-09-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fa991c8fa53343378639c93f812af7812023-11-03T14:28:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-09-01692699270010.1080/23802359.2021.19663401966340The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plantXiaoai Fang0Siyi Zhang1Xi’an International UniversityXi’an International UniversityRotheca myricoides (Hochst.) Steane & Mabb. is a plant species used in traditional medicine for the management of diabetes in the lower eastern part of Kenya (Kitui, Machakos and Makueni Counties, Kenya) that is mainly inhabited by the Kamba community. The complete chloroplast genome sequence of R. myricoides was assembled from the whole genome Illumina sequencing data. The genome was 150,596 bp in length, contained an SSC region of 17,237 bp and LSC region of 83,489 bp, separated by IRs of 24,935 bp, each. The genome contained 114 unique genes, including 80 PCGs, 4 rRNA genes, and 30 tRNA genes. In addition, 18 genes contained one or two introns, including 10 PCG genes with a single intron, 2 PCG genes harboring two introns, and 6 tRNA genes harboring a single intron. Phylogenetic analysis supported R. myricoides had the closest genetic relationship with Rotheca serrata and clustered with the Rotheca family species.http://dx.doi.org/10.1080/23802359.2021.1966340rotheca myricoides (hochst.) steane&mabb.chloroplast genomeillumina sequencingphylogenetic analysis |
| spellingShingle | Xiaoai Fang Siyi Zhang The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant Mitochondrial DNA. Part B. Resources rotheca myricoides (hochst.) steane&mabb. chloroplast genome illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant |
| title_full | The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant |
| title_fullStr | The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant |
| title_full_unstemmed | The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant |
| title_short | The complete chloroplast genome sequence of Rotheca myricoides (Hochst.) Steane & Mabb., a traditional medicinal plant |
| title_sort | complete chloroplast genome sequence of rotheca myricoides hochst steane mabb a traditional medicinal plant |
| topic | rotheca myricoides (hochst.) steane&mabb. chloroplast genome illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1966340 |
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