Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
The complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two invert...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1881838 |
| _version_ | 1797638980036984832 |
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| author | Aihong Yang Miao Hu Tengyun Liu Shujuan Liu Hua Zhou Faxin Yu |
| author_facet | Aihong Yang Miao Hu Tengyun Liu Shujuan Liu Hua Zhou Faxin Yu |
| author_sort | Aihong Yang |
| collection | DOAJ |
| description | The complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two inverted repeat (IR) regions of 23,451 bp. A total of 113 unique genes were identified, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on cp genomes of 20 Actinidiaceae species revealed that A. latifolia was evolutionarily close to A. eriantha, A. styracifolia, and A. fulvicoma. |
| first_indexed | 2024-03-11T13:11:11Z |
| format | Article |
| id | doaj.art-fad9eb8fae154f2a82a81a81c66f1ff2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:11Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fad9eb8fae154f2a82a81a81c66f1ff22023-11-03T14:08:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016267267310.1080/23802359.2021.18818381881838Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)Aihong Yang0Miao Hu1Tengyun Liu2Shujuan Liu3Hua Zhou4Faxin Yu5The Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of SciencesThe complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two inverted repeat (IR) regions of 23,451 bp. A total of 113 unique genes were identified, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on cp genomes of 20 Actinidiaceae species revealed that A. latifolia was evolutionarily close to A. eriantha, A. styracifolia, and A. fulvicoma.http://dx.doi.org/10.1080/23802359.2021.1881838actinidia latifoliacomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Aihong Yang Miao Hu Tengyun Liu Shujuan Liu Hua Zhou Faxin Yu Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) Mitochondrial DNA. Part B. Resources actinidia latifolia complete chloroplast genome phylogenetic analysis |
| title | Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) |
| title_full | Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) |
| title_fullStr | Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) |
| title_full_unstemmed | Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) |
| title_short | Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) |
| title_sort | characterization and phylogenetic analysis of the complete chloroplast genome of actinidia latifolia actinidiaceae |
| topic | actinidia latifolia complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1881838 |
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