Bambara groundnut soil metagenomics data
Metagenomics analysis was carried out on extracted DNA of Rhizospheric soil samples from Bambara groundnut. This dataset presented reports on the bacterial communities at the different growth stages of Bambara groundnut and the bulk soil. Paired-end Illumina-Miseq sequencing of 16S rRNA genes was ca...
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| Format: | Article |
| Language: | English |
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Elsevier
2020-06-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340920304364 |
| _version_ | 1811222958312521728 |
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| author | Caroline Fadeke Ajilogba Olubukola Oluranti Babalola |
| author_facet | Caroline Fadeke Ajilogba Olubukola Oluranti Babalola |
| author_sort | Caroline Fadeke Ajilogba |
| collection | DOAJ |
| description | Metagenomics analysis was carried out on extracted DNA of Rhizospheric soil samples from Bambara groundnut. This dataset presented reports on the bacterial communities at the different growth stages of Bambara groundnut and the bulk soil. Paired-end Illumina-Miseq sequencing of 16S rRNA genes was carried on the soil samples of the bacterial community with the phyla dominated by Actinobacteria (30.1%), Proteobacteria (22%), Acidobacteria (20.9%), Bacteroides (8.4%), Chloroflex (4.5%) and Firmicutes (4.4%) in all the soil samples. Samples from the bulk soil had the least average percent phyla, while samples at seed maturity stage had the highest average percent phyla. The alpha diversity at p = 0.05 was highest at this stage compared to the others and the control. Rubrobacter was the most predominant genera, after which is Acidobacterium and Skermanella. The biodiversity profile generated from the metagenomics analysis is useful in increasing knowledge of the drought-tolerance ability of Bambara groundnut. The data generated can be used to compare bacterial diversity at different growth stages of plants. |
| first_indexed | 2024-04-12T08:23:50Z |
| format | Article |
| id | doaj.art-faed41cfc94f475584d6c15a906f3ebe |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-12T08:23:50Z |
| publishDate | 2020-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-faed41cfc94f475584d6c15a906f3ebe2022-12-22T03:40:28ZengElsevierData in Brief2352-34092020-06-0130105542Bambara groundnut soil metagenomics dataCaroline Fadeke Ajilogba0Olubukola Oluranti Babalola1Food Security and Safety Niche Area, Faculty of Natural and Agricultural Science, North-West University, Mmabatho 2735, North West Province, South Africa; Present institution: Agricultural Research Council – Soil, Climate and Water, Division of Agrometeorology, 600 Belvedere Street, Arcadia 0083, Pretoria, South AfricaFood Security and Safety Niche Area, Faculty of Natural and Agricultural Science, North-West University, Mmabatho 2735, North West Province, South Africa; Corresponding author.Metagenomics analysis was carried out on extracted DNA of Rhizospheric soil samples from Bambara groundnut. This dataset presented reports on the bacterial communities at the different growth stages of Bambara groundnut and the bulk soil. Paired-end Illumina-Miseq sequencing of 16S rRNA genes was carried on the soil samples of the bacterial community with the phyla dominated by Actinobacteria (30.1%), Proteobacteria (22%), Acidobacteria (20.9%), Bacteroides (8.4%), Chloroflex (4.5%) and Firmicutes (4.4%) in all the soil samples. Samples from the bulk soil had the least average percent phyla, while samples at seed maturity stage had the highest average percent phyla. The alpha diversity at p = 0.05 was highest at this stage compared to the others and the control. Rubrobacter was the most predominant genera, after which is Acidobacterium and Skermanella. The biodiversity profile generated from the metagenomics analysis is useful in increasing knowledge of the drought-tolerance ability of Bambara groundnut. The data generated can be used to compare bacterial diversity at different growth stages of plants.http://www.sciencedirect.com/science/article/pii/S2352340920304364RhizosphereMicrobesSoilLegumesMetagenomeDNA |
| spellingShingle | Caroline Fadeke Ajilogba Olubukola Oluranti Babalola Bambara groundnut soil metagenomics data Data in Brief Rhizosphere Microbes Soil Legumes Metagenome DNA |
| title | Bambara groundnut soil metagenomics data |
| title_full | Bambara groundnut soil metagenomics data |
| title_fullStr | Bambara groundnut soil metagenomics data |
| title_full_unstemmed | Bambara groundnut soil metagenomics data |
| title_short | Bambara groundnut soil metagenomics data |
| title_sort | bambara groundnut soil metagenomics data |
| topic | Rhizosphere Microbes Soil Legumes Metagenome DNA |
| url | http://www.sciencedirect.com/science/article/pii/S2352340920304364 |
| work_keys_str_mv | AT carolinefadekeajilogba bambaragroundnutsoilmetagenomicsdata AT olubukolaolurantibabalola bambaragroundnutsoilmetagenomicsdata |