Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus
Eurasian spruce bark beetle, Ips typographus, is an aggressive pest among spruce vegetation. I. typographus host trees colonization is mediated by aggregation pheromone, consisting of 2-methyl-3-buten-2-ol and cis-verbenol produced in the beetle gut. Other biologically active compounds such as ipsdi...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2022-04-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092200124X |
| _version_ | 1818315251425214464 |
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| author | Rajarajan Ramakrishnan Amit Roy Marco Kai Aleš Svatoš Anna Jirošová |
| author_facet | Rajarajan Ramakrishnan Amit Roy Marco Kai Aleš Svatoš Anna Jirošová |
| author_sort | Rajarajan Ramakrishnan |
| collection | DOAJ |
| description | Eurasian spruce bark beetle, Ips typographus, is an aggressive pest among spruce vegetation. I. typographus host trees colonization is mediated by aggregation pheromone, consisting of 2-methyl-3-buten-2-ol and cis-verbenol produced in the beetle gut. Other biologically active compounds such as ipsdienol and verbenone have also been detected. 2-Methyl-3-buten-2-ol and ipsdienol are produced de-novo in the mevalonate pathway and cis-verbenol is oxidized from α-pinene sequestrated from the host. The pheromone production is presumably connected with further changes in the primary and secondary metabolisms in the beetle. To evaluate such possibilities, we obtained qualitative metabolomic data from the analysis of beetle guts in different life stages. We used Ultra-high-performance liquid chromatography-electrospray ionization-high resolution tandem mass spectrometry (UHPLC-ESI-HRMS/MS). The data were dereplicated using metabolomic software (XCMS, Camera, and Bio-Conductor) and approximately 3000 features were extracted. The metabolite was identified using GNPS databases and de-novo annotation in Sirius program followed by manual curation.Further, we obtained differential gene expression (DGE) of RNA sequencing data for mevalonate pathway genes and CytochromeP450 (CyP450) genes from the gut tissue of the beetle to delineate their role on life stage-specific pheromone biosynthesis. CyP450 gene families were classified according to subclasses and given individual expression patterns as heat maps. Three mevalonate pathway genes and five CyP450 gene relative expressions were analyzed using quantitative real-time (qRT) PCR, from the gut tissue of different life stage male/female beetles, as extended knowledge of related research article (Ramakrishnan et al., 2022). This data provides essential information on pheromone biosynthesis at the molecular level and supports further research on pheromone biosynthesis and detoxification in conifer bark beetles. |
| first_indexed | 2024-12-13T09:02:34Z |
| format | Article |
| id | doaj.art-fb3ea5fd0c7a47ca8e6604e53fc1b334 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-13T09:02:34Z |
| publishDate | 2022-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-fb3ea5fd0c7a47ca8e6604e53fc1b3342022-12-21T23:53:09ZengElsevierData in Brief2352-34092022-04-0141107912Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographusRajarajan Ramakrishnan0Amit Roy1Marco Kai2Aleš Svatoš3Anna Jirošová4EXTEMIT-K, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Czech RepublicEXTEMIT-K, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Czech RepublicMax Planck Institute of Chemical Ecology, Jena, GermanyMax Planck Institute of Chemical Ecology, Jena, GermanyEXTEMIT-K, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Czech Republic; Corresponding author.Eurasian spruce bark beetle, Ips typographus, is an aggressive pest among spruce vegetation. I. typographus host trees colonization is mediated by aggregation pheromone, consisting of 2-methyl-3-buten-2-ol and cis-verbenol produced in the beetle gut. Other biologically active compounds such as ipsdienol and verbenone have also been detected. 2-Methyl-3-buten-2-ol and ipsdienol are produced de-novo in the mevalonate pathway and cis-verbenol is oxidized from α-pinene sequestrated from the host. The pheromone production is presumably connected with further changes in the primary and secondary metabolisms in the beetle. To evaluate such possibilities, we obtained qualitative metabolomic data from the analysis of beetle guts in different life stages. We used Ultra-high-performance liquid chromatography-electrospray ionization-high resolution tandem mass spectrometry (UHPLC-ESI-HRMS/MS). The data were dereplicated using metabolomic software (XCMS, Camera, and Bio-Conductor) and approximately 3000 features were extracted. The metabolite was identified using GNPS databases and de-novo annotation in Sirius program followed by manual curation.Further, we obtained differential gene expression (DGE) of RNA sequencing data for mevalonate pathway genes and CytochromeP450 (CyP450) genes from the gut tissue of the beetle to delineate their role on life stage-specific pheromone biosynthesis. CyP450 gene families were classified according to subclasses and given individual expression patterns as heat maps. Three mevalonate pathway genes and five CyP450 gene relative expressions were analyzed using quantitative real-time (qRT) PCR, from the gut tissue of different life stage male/female beetles, as extended knowledge of related research article (Ramakrishnan et al., 2022). This data provides essential information on pheromone biosynthesis at the molecular level and supports further research on pheromone biosynthesis and detoxification in conifer bark beetles.http://www.sciencedirect.com/science/article/pii/S235234092200124XPheromone biosynthesisBark beetleSpruceGut tissueDe-novoOmics |
| spellingShingle | Rajarajan Ramakrishnan Amit Roy Marco Kai Aleš Svatoš Anna Jirošová Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus Data in Brief Pheromone biosynthesis Bark beetle Spruce Gut tissue De-novo Omics |
| title | Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus |
| title_full | Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus |
| title_fullStr | Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus |
| title_full_unstemmed | Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus |
| title_short | Metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest Ips typographus |
| title_sort | metabolome and transcriptome related dataset for pheromone biosynthesis in an aggressive forest pest ips typographus |
| topic | Pheromone biosynthesis Bark beetle Spruce Gut tissue De-novo Omics |
| url | http://www.sciencedirect.com/science/article/pii/S235234092200124X |
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