In Silico and Transcription Analysis of Trehalose-6-phosphate Phosphatase Gene Family of Wheat: Trehalose Synthesis Genes Contribute to Salinity, Drought Stress and Leaf Senescence

Trehalose-6-phosphate phosphatase (<i>TPP</i>) genes take part in trehalose metabolism and also in stress tolerance, which has been well documented in many species but poorly understood in wheat. The present research has identified a family of 31 <i>TPP</i> genes in <i>...

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Main Authors: Md Ashraful Islam, Md Mustafizur Rahman, Md Mizanor Rahman, Xiujuan Jin, Lili Sun, Kai Zhao, Shuguang Wang, Ashim Sikdar, Hafeez Noor, Jong-Seong Jeon, Wenjun Zhang, Daizhen Sun
Format: Article
Language:English
Published: MDPI AG 2021-10-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/12/11/1652
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Summary:Trehalose-6-phosphate phosphatase (<i>TPP</i>) genes take part in trehalose metabolism and also in stress tolerance, which has been well documented in many species but poorly understood in wheat. The present research has identified a family of 31 <i>TPP</i> genes in <i>Triticum aestivum</i> L. through homology searches and classified them into five clades by phylogenetic tree analysis, providing evidence of an evolutionary status with <i>Hordeum vulgare, Brachypodium distachyon</i> and <i>Oryza sativa.</i> The exon-intron distribution revealed a discrete evolutionary history and projected possible gene duplication occurrences. Furthermore, different computational approaches were used to analyze the physical and chemical properties, conserved domains and motifs, subcellular and chromosomal localization, and three-dimensional (3-D) protein structures. <i>Cis</i>-regulatory elements (CREs) analysis predicted that <i>TaTPP</i> promoters consist of CREs related to plant growth and development, hormones, and stress. Transcriptional analysis revealed that the transcription levels of <i>TaTPPs</i> were variable in different developmental stages and organs. In addition, qRT-PCR analysis showed that different <i>TaTPPs</i> were induced under salt and drought stresses and during leaf senescence. Therefore, the findings of the present study give fundamental genomic information and possible biological functions of the <i>TaTPP</i> gene family in wheat and will provide the path for a better understanding of <i>TaTPPs</i> involvement in wheat developmental processes, stress tolerance, and leaf senescence.
ISSN:2073-4425