The complete chloroplast genome of Angelica nitida
Angelica nitida is an endemic species in China. The complete chloroplast genome sequence of A. nitida was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 146,512bp in length and constructed out of four parts – a large single copy (LSC)...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1383198 |
| _version_ | 1827774331018543104 |
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| author | Yi-Qi Deng Jun Wen Yan Yu Xing-Jin He |
| author_facet | Yi-Qi Deng Jun Wen Yan Yu Xing-Jin He |
| author_sort | Yi-Qi Deng |
| collection | DOAJ |
| description | Angelica nitida is an endemic species in China. The complete chloroplast genome sequence of A. nitida was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 146,512bp in length and constructed out of four parts – a large single copy (LSC) region of 93,298bp, a small single copy (SSC) region of 18,068bp and two inverted repeat (IRa and IRb) regions of 17,573bp each. The genome annotation predicted a total of 113 genes, including 80 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that A. nitida is most closely related to Angelica dahurica. |
| first_indexed | 2024-03-11T13:36:54Z |
| format | Article |
| id | doaj.art-fcdc23f80bb44cc1b07b180b19318ec9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:54Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fcdc23f80bb44cc1b07b180b19318ec92023-11-02T15:42:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012269469510.1080/23802359.2017.13831981383198The complete chloroplast genome of Angelica nitidaYi-Qi Deng0Jun Wen1Yan Yu2Xing-Jin He3College of Life Sciences, Sichuan UniversityCollege of Life Sciences, Sichuan UniversityCollege of Life Sciences, Sichuan UniversityCollege of Life Sciences, Sichuan UniversityAngelica nitida is an endemic species in China. The complete chloroplast genome sequence of A. nitida was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 146,512bp in length and constructed out of four parts – a large single copy (LSC) region of 93,298bp, a small single copy (SSC) region of 18,068bp and two inverted repeat (IRa and IRb) regions of 17,573bp each. The genome annotation predicted a total of 113 genes, including 80 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that A. nitida is most closely related to Angelica dahurica.http://dx.doi.org/10.1080/23802359.2017.1383198chloroplastgenome sequenceangelica nitida |
| spellingShingle | Yi-Qi Deng Jun Wen Yan Yu Xing-Jin He The complete chloroplast genome of Angelica nitida Mitochondrial DNA. Part B. Resources chloroplast genome sequence angelica nitida |
| title | The complete chloroplast genome of Angelica nitida |
| title_full | The complete chloroplast genome of Angelica nitida |
| title_fullStr | The complete chloroplast genome of Angelica nitida |
| title_full_unstemmed | The complete chloroplast genome of Angelica nitida |
| title_short | The complete chloroplast genome of Angelica nitida |
| title_sort | complete chloroplast genome of angelica nitida |
| topic | chloroplast genome sequence angelica nitida |
| url | http://dx.doi.org/10.1080/23802359.2017.1383198 |
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