ExpressInHost: A Codon Tuning Tool for the Expression of Recombinant Proteins in Host Microorganisms

ExpressInHost: A Codon Tuning Tool for the Expression of Recombinant Proteins in Host Microorganisms

ExpressInHost (https://gitlab.com/a.raguin/expressinhost) is a GTK/C++ based user friendly graphical interface that allows tuning the codon sequence of an mRNA for recombinant protein expression in a host microorganism. Heterologous gene expression is widely implemented in biotechnology companies an...

Full description

Bibliographic Details
Main Authors:	Adélaïde Raguin, Ian Stansfield, Maria Carmen Romano
Format:	Article
Language:	English
Published:	Ubiquity Press 2023-02-01
Series:	Journal of Open Research Software
Subjects:	codon tuning recombinant expression heterologous proteins graphical user interface
Online Access:	https://account.openresearchsoftware.metajnl.com/index.php/up/article/view/385

Similar Items

Evaluation of Potential In Vitro Recombination Events in Codon Deoptimized FMDV Strains
by: Edward Spinard, et al.
Published: (2023-03-01)

EXPRESSION OF NUCLEOCAPSID VIRAL PROTEINS IN THE BACTERIAL SYSTEM OF Escherichia coli: THE INFLUENCE OF THE CODON COMPOSITION AND THE UNIFORMITY OF ITS DISTRIBUTION WITHIN GENE
by: E. G. Fomina, et al.
Published: (2020-12-01)

An analysis of codon utilization patterns in the chloroplast genomes of three species of Coffea
by: Yaqi Li, et al.
Published: (2023-08-01)

Anaerobic Fungal Mevalonate Pathway Genomic Biases Lead to Heterologous Toxicity Underpredicted by Codon Adaptation Indices
by: Ethan T. Hillman, et al.
Published: (2021-09-01)

Evolution of rat hepatitis E virus: recombination, divergence and codon usage bias
by: Liang Zhao, et al.
Published: (2023-11-01)

Evolution of codon usage in Taenia saginata genomes and its impact on the host
by: Siddiq Ur Rahman, et al.
Published: (2023-01-01)

Synonymous Codon Pattern of Cowpea Mild Mottle Virus Sheds Light on Its Host Adaptation and Genome Evolution
by: Siqi Yang, et al.
Published: (2022-03-01)

Insights into Synonymous Codon Usage Bias in Hepatitis C Virus and Its Adaptation to Hosts
by: Rekha Khandia, et al.
Published: (2023-02-01)

Why Is the UAG (Amber) Stop Codon Almost Absent in Highly Expressed Bacterial Genes?
by: Dominique Belin, et al.
Published: (2022-03-01)

Evolution of codon usage in Zika virus genomes is host and vector specific
by: Azeem Mehmood Butt, et al.
Published: (2016-01-01)

Host Plants Shape the Codon Usage Pattern of Turnip Mosaic Virus
by: Lang Qin, et al.
Published: (2022-10-01)

corseq: fast and efficient identification of favoured codons from next generation sequencing reads
by: Salvatore Camiolo, et al.
Published: (2018-07-01)

Codon Usage Provides Insights into the Adaptive Evolution of Mycoviruses in Their Associated Fungi Host
by: Qianqian Wang, et al.
Published: (2022-07-01)

Codon Usage Profiling of Chloroplast Genome in Juglandaceae
by: Yajun Zeng, et al.
Published: (2023-02-01)

Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons
by: Drago Perina, et al.
Published: (2009-01-01)

Analysis of Codon Usage Bias in Xyloglucan Endotransglycosylase (XET) Genes
by: Bo Xiong, et al.
Published: (2023-03-01)

An exploratory in silico comparison of open-source codon harmonization tools
by: Thomas Willems, et al.
Published: (2023-11-01)

Analysis of codon usage bias of thioredoxin in apicomplexan protozoa
by: Dawei Wang, et al.
Published: (2023-11-01)

Analysis of codon usage patterns in 48 Aconitum species
by: Meihua Yang, et al.
Published: (2023-11-01)

Gene expression in recombinant microorganisms /
by: Smith, Alan, 1943-
Published: (1995)

Application of codon usage and context analysis in genes up- or down-regulated in neurodegeneration and cancer to combat comorbidities
by: Rekha Khandia, et al.
Published: (2023-06-01)

A Synthetic Biology Approach for Vaccine Candidate Design against Delta Strain of SARS-CoV-2 Revealed Disruption of Favored Codon Pair as a Better Strategy over Using Rare Codons
by: Pankaj Gurjar, et al.
Published: (2023-02-01)

Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset
by: Xing Yang, et al.
Published: (2014-12-01)

Identification of the optimal codons for acetolactate synthase from weeds: an in-silico study
by: Madhab Kumar Sen, et al.
Published: (2021-06-01)

Hosts and Heterologous Expression Strategies of Recombinant Toxins for Therapeutic Purposes
by: Luana di Leandro, et al.
Published: (2023-12-01)

A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations
by: Jianglin Zhou, et al.
Published: (2023-01-01)

Strategies for Heterologous Expression, Synthesis, and Purification of Animal Venom Toxins
by: Esperanza Rivera-de-Torre, et al.
Published: (2022-01-01)

Predict Diabetes Using Voting Classifier and Hyper Tuning Technique
by: Chra Ali Kamal, et al.
Published: (2023-01-01)

Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei
by: Amit Joshi, et al.
Published: (2022-03-01)

Codon optimization regulates IgG3 and IgM expression and glycosylation in N. benthamiana
by: Lin Sun, et al.
Published: (2023-12-01)

Cloning, Expression, and Purification of Recombinant Mouse Interferon-γ
by: Seyedeh Elham Badiee Kheirabadi, et al.
Published: (2021-02-01)

Deciphering Codon Usage Patterns in Genome of <i>Cucumis sativus</i> in Comparison with Nine Species of Cucurbitaceae
by: Yuan Niu, et al.
Published: (2021-11-01)

A small stretch of poor codon usage at the beginning of dengue virus open reading frame may act as a translational checkpoint
by: Maneenop Yimyaem, et al.
Published: (2023-12-01)

Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species
by: Jiajing Sheng, et al.
Published: (2021-09-01)

Codon usage pattern of the ancestor of green plants revealed through Rhodophyta
by: Huipeng Yao, et al.
Published: (2023-09-01)

Codon Bias Can Determine Sorting of a Potassium Channel Protein
by: Anja J. Engel, et al.
Published: (2021-05-01)

The Influence of the Selection at the Amino Acid Level on Synonymous Codon Usage from the Viewpoint of Alternative Genetic Codes
by: Konrad Pawlak, et al.
Published: (2023-01-01)

Limited Cross-Protection against Infectious Bronchitis Provided by Recombinant Infectious Bronchitis Viruses Expressing Heterologous Spike Glycoproteins
by: Sarah Keep, et al.
Published: (2020-06-01)

Comparative analysis of codon usage patterns of Plasmodium helical interspersed subtelomeric (PHIST) proteins
by: Baoling Yang, et al.
Published: (2023-12-01)

CAM: an alignment-free method to recover phylogenies using codon aversion motifs
by: Justin B. Miller, et al.
Published: (2019-06-01)