The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China
Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1618211 |
| _version_ | 1797639828262617088 |
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| author | Ao Wang Jian He Shenjian Xu Linlin Peng Liangcheng Zhao |
| author_facet | Ao Wang Jian He Shenjian Xu Linlin Peng Liangcheng Zhao |
| author_sort | Ao Wang |
| collection | DOAJ |
| description | Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus. |
| first_indexed | 2024-03-11T13:23:04Z |
| format | Article |
| id | doaj.art-fd5b8c9d8caa4211b13b2f862ce8b228 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:04Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fd5b8c9d8caa4211b13b2f862ce8b2282023-11-03T10:06:46ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01412037203810.1080/23802359.2019.16182111618211The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest ChinaAo Wang0Jian He1Shenjian Xu2Linlin Peng3Liangcheng Zhao4Beijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityAcer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus.http://dx.doi.org/10.1080/23802359.2019.1618211acer catalpifoliumchloroplast genomephylogenetic analysis |
| spellingShingle | Ao Wang Jian He Shenjian Xu Linlin Peng Liangcheng Zhao The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China Mitochondrial DNA. Part B. Resources acer catalpifolium chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China |
| title_full | The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China |
| title_fullStr | The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China |
| title_full_unstemmed | The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China |
| title_short | The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China |
| title_sort | complete chloroplast genome of acer catalpifolium sapindaceae a rare and endangered plant in southwest china |
| topic | acer catalpifolium chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1618211 |
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