Novel definition files for human GeneChips based on GeneAnnot

Novel definition files for human GeneChips based on GeneAnnot

<p>Abstract</p> <p>Background</p> <p>Improvements in genome sequence annotation revealed discrepancies in the original probeset/gene assignment in Affymetrix microarray and the existence of differences between annotations and effective alignments of probes and transcrip...

Full description

Bibliographic Details
Main Authors:	Ferrari Sergio, Shmoish Michael, Safran Marilyn, Sirota Alexandra, Coppe Alessandro, Bortoluzzi Stefania, Ferrari Francesco, Lancet Doron, Danieli Gian, Bicciato Silvio
Format:	Article
Language:	English
Published:	BMC 2007-11-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/8/446

Similar Items

Complete gene expression profiling of <it>Saccharopolyspora erythraea </it>using GeneChip DNA microarrays
by: Bordoni Roberta, et al.
Published: (2007-11-01)

GIFtS: annotation landscape analysis with GeneCards
by: Dalah Irina, et al.
Published: (2009-10-01)

A-MADMAN: Annotation-based microarray data meta-analysis tool
by: Romualdi Chiara, et al.
Published: (2009-06-01)

GCOD - GeneChip Oncology Database
by: Gusenleitner Daniel, et al.
Published: (2011-02-01)

Assessing affymetrix GeneChip microarray quality
by: Lukk Margus, et al.
Published: (2011-05-01)

Washing scaling of GeneChip microarray expression
by: Krohn Knut, et al.
Published: (2010-05-01)

Estimating RNA-quality using GeneChip microarrays
by: Fasold Mario, et al.
Published: (2012-05-01)

"Hook"-calibration of GeneChip-microarrays: Theory and algorithm
by: Preibisch Stephan, et al.
Published: (2008-08-01)

Genomic expression during human myelopoiesis
by: Gemelli Claudia, et al.
Published: (2007-08-01)

Affymetrix GeneChip system: moving from research to the clinic.
by: Ragoussis, J, et al.
Published: (2006)

Analysis of Affymetrix GeneChip® data using amplified RNA
by: Leslie Cope, et al.
Published: (2006-02-01)

Evolving DNA motifs to predict GeneChip probe performance
by: Harrison AP, et al.
Published: (2009-03-01)

Comparison of target labeling methods for use with Affymetrix GeneChips
by: Vernon Suzanne D, et al.
Published: (2007-05-01)

Using surveys of Affymetrix GeneChips to study antisense expression
by: Sanchez-Graillet Olivia, et al.
Published: (2010-06-01)

"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures
by: Krohn Knut, et al.
Published: (2008-08-01)

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
by: Harrison Andrew P, et al.
Published: (2007-01-01)

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
by: Asgharnegad Lida, et al.
Published: (2005-06-01)

A gene selection method for GeneChip array data with small sample sizes
by: Chen Zhongxue, et al.
Published: (2011-12-01)

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
by: Johnston Caroline E, et al.
Published: (2007-06-01)

Analysis of Gene Expression Responses to a Infection in Rugao Chicken Intestine Using GeneChips
by: D. Q. Luan, et al.
Published: (2012-02-01)

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
by: Xia Yuannan, et al.
Published: (2006-12-01)

A multistep bioinformatic approach detects putative regulatory elements in gene promoters
by: Pizzi Cinzia, et al.
Published: (2005-05-01)

ExonMiner: Web service for analysis of GeneChip Exon array data
by: Imoto Seiya, et al.
Published: (2008-11-01)

GeneChip analysis of resistant Mycobacterium tuberculosis with previously treated tuberculosis in Changchun
by: Ming-Jin Zhang, et al.
Published: (2018-05-01)

Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
by: Lu Chao
Published: (2004-07-01)

SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
by: Takada Toyoyuki, et al.
Published: (2009-05-01)

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data
by: Wouters Bas J, et al.
Published: (2010-05-01)

Uncovering the expression patterns of chimeric transcripts using surveys of Affymetrix GeneChips
by: Rowsell Joanna, et al.
Published: (2010-12-01)

A class of models for analyzing GeneChip<sup>® </sup>gene expression analysis array data
by: Khalid Najma, et al.
Published: (2005-02-01)

Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set.
Published: (2006-05-01)

A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data
by: Zhu Dongxiao, et al.
Published: (2008-04-01)

A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
by: Hein Anne-Mette K, et al.
Published: (2006-07-01)

Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
by: Augood Sarah J, et al.
Published: (2006-04-01)

A Comparative Study of the Impact of G-Stack Probes on Various Affymetrix GeneChips of Mammalia
by: Farhat Naureen Memon, et al.
Published: (2010-01-01)

Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays.
by: Diana Abdueva, et al.
Published: (2007-09-01)

Widespread existence of uncorrelated probe intensities from within the same probeset on Affymetrix GeneChips
by: Sanchez-Graillet Olivia, et al.
Published: (2008-06-01)

Diagnostic Performance of GeneChip for the Rapid Detection of Drug-Resistant Tuberculosis in Different Subgroups of Patients
by: Shi J, et al.
Published: (2021-02-01)

Quality assessment of buccal versus blood genomic DNA using the Affymetrix 500 K GeneChip
by: Martin Lisa J, et al.
Published: (2007-11-01)

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
by: Zhu Qianqian, et al.
Published: (2010-05-01)

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
by: Pearson John V, et al.
Published: (2005-10-01)